MidgeBase gene description page [Pn.13011]
Outline
| Gene ID | Pn.13011 |
| Type | Protein coding gene |
| Scaffold | PnScaf18260 |
| Start | 20869 |
| End | 22400 |
| Direction | + |
Sequence
Transcript: 1404 (bp)
ATGATCCGCGCAAGTAAATTGATTAAACGTGTCTGCTACAGTCTACTGCTGCTGACACTATTTCAGGTGTCTTTCTATTATACTGTCAAAAAGGAAGGAAAATCAGAAGAGCAAGTCGAATCTAATGACGAGAAAATCTGTTGGGAAGATGAGGAATTCAATGCGTATGAAAATAACCGGACTGGGCCGGGTGAACAATGTGCACCATTCACTCTCTCTGACCCAAAGGACATCGCAAGAAATGAAGAATTTTTCAGGAAAGAAGGCTTCTATGTGGTTGTTAGTGACAAAATATCTGTCAATCGATCTGTGGCAGACAACAGACCAGATGCGTGCAAAACTAAGAAATACCTCCGGAAATTGCCGAGCGTGTCAATAATCATCACCTTTCACAATGAAGTTTGGAGTGTCCTACTGAGATGCATTCACTCGATCTTCAACCGAACCCCGAGGGAGCTGCTTCATGAGGTCATGCTGCTCAACGACGCAAGCACCTTTCCCGAGCTGGGAAAACCGCTTCAAAAGTATGTCGATGAGAATTTTGACGGCAAAGTCGTGATTCACAACAACGAAAAGCGAGAGGGCCTGATTCGATCGCGGATGATTGGCGCGAAGATGGCGAAAGCTGAAGTCATCATGTACCTTGACTCGCACATGGAAGTCGGAGTGAACTACCTTCCGCCGCTGCTTGACGCACTCGTGCATCATCCGACTCACGCAGTCGCTTCGATTGTCGGTGGAATCGACCACGCCACATTTGCATGTGCCGACAAAGGCGTTGGCTTCCGAGGGGCTTTCGACTGGTCGTTCCGCGGTCAGTGGCTGCCGAGATGGAAAACGTCAGACTACTCGGAAAACTACGAGTTGCCTAGTTTAGCCGGCAATGCTTATGTCATCATGAGAGAGCACTTTTTCAACCTCGGCGGCTACGATGAGGGGCTTCATATTTGGAATGGCGAAAACTATGAGATATCGCTGAAACTGTGGCTCTGCTCCGGCGGGATTCTCTCCGTTCCTTGCTCGAGAGCTAGCCATTTGAGCAAGCTGCACACCGCCTACCGAACCTCGAGCGATGGCTCAGATTTTGTCGCACGGAATCTCAAGCGAGTCGCTGAGGTTTGGCTCGACGACTACAAGAAGTACTTTTACCGAACTGATCAGGAAAGATACGACAAAGCCGATCCCGGTGACCTAAGCAAGCAATTCGAGCTGAAAAGGAGGCTGAAGTGCAAGCCATTCCAATACTTCCTCGACGTGGTCATGCCGGAATTCCTTCTGAGATATCCGCTAGAACCGCAATACTTCGCGACTGGATCTGTGCAAAACTTGGAGCTAAAGCAGTGCATTTCGCTCACAAATTATGACTACTACTCGCCTTTAACACTTACCGACTGCAACAAGATT
Protein: 468 (aa)
MIRASKLIKRVCYSLLLLTLFQVSFYYTVKKEGKSEEQVESNDEKICWEDEEFNAYENNRTGPGEQCAPFTLSDPKDIARNEEFFRKEGFYVVVSDKISVNRSVADNRPDACKTKKYLRKLPSVSIIITFHNEVWSVLLRCIHSIFNRTPRELLHEVMLLNDASTFPELGKPLQKYVDENFDGKVVIHNNEKREGLIRSRMIGAKMAKAEVIMYLDSHMEVGVNYLPPLLDALVHHPTHAVASIVGGIDHATFACADKGVGFRGAFDWSFRGQWLPRWKTSDYSENYELPSLAGNAYVIMREHFFNLGGYDEGLHIWNGENYEISLKLWLCSGGILSVPCSRASHLSKLHTAYRTSSDGSDFVARNLKRVAEVWLDDYKKYFYRTDQERYDKADPGDLSKQFELKRRLKCKPFQYFLDVVMPEFLLRYPLEPQYFATGSVQNLELKQCISLTNYDYYSPLTLTDCNKI
| Type | Start | End | Length |
| CDS |
20869 |
21058 |
190 |
| CDS |
21128 |
21269 |
142 |
| CDS |
21326 |
22397 |
1072 |
| intron |
21059 |
21127 |
69 |
| intron |
21270 |
21325 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001864263 |
N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] gb|EDS39933.1| N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] |
1e-102 |
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| InterPro |
IPR003859 |
Galactosyltransferase, metazoa |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0016757 |
transferase activity, transferring glycosyl groups |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
5.4e-08 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
1.4e-19 |
| Pfam |
PF13506.1 |
Glycosyl transferase family 21 |
0.07 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
4.2e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00460 |
| P. vanderplanki |
Pv.08089 |