MidgeBase gene description page [Pn.13000]
Outline
| Gene ID | Pn.13000 |
| Type | Protein coding gene |
| Scaffold | PnScaf18206 |
| Start | 43716 |
| End | 46294 |
| Direction | - |
Sequence
Transcript: 2457 (bp)
ATGGATGTAGCTGATACCCATGCCGGTCGTTTGTTGGTGAAAGATGAAGTTGCTTTAAGATGCCAGAAATTGTTTTCAGATTTCCTCGAAGAGTACAAGGAGGATGGCGAAGTTAAGTACTTGCGCAGCGCAATGGAGCTGCAGAATCCCGATCGCTTCACACTCGAGGTTAATTTTGAGGATGTCGAGAAATACAATCAGTATTTGTCCACTGCAATCATTGAGGAATACTATCGCATCTACCCGTTTTTGTGCCAGGCCGTATCGAATTTCGTCAAAGATCGCGCAGAGTCGAAGAAATCAAAGGAGTGCTACGTTGCCTTCACAGACGTGCCTACTCGCCACAAAGTTCGCGAACTGACAACCGCTAAAATCGGCACACTCATCCGTATCTCCGGCCAAGTCGTGCGAACTCATCCCGTCCATCCCGAGCTCGTCACTGGCACTTTCCTATGCATGGACTGTCAAACCGAAATTCGCGATGTCGAGCAGCAGTTCAAGTTCACAAACCCGACCATTTGCCGCAATCCAGTCTGCTCAAACCGCCGTCGCTTCATGCTCGAGGTAGACAAGAGTCTCTTCGTCGACTTCCAGAAGGTGCGCATCCAGGAGACGCAAGCAGAGCTGCCTCGCGGCGCAATTCCTCGCTCGGTGGAAATTATCTTGAGAGCCGAAAACGTCGAGTCTGTACAGGCGGGCGACCGCTACGATTTCACAGGAACGCTTATTGTCGTGCCCGATGTTGGCTCGATTCAGTTGCCTGGCGCCAAGGCCGACGTCCGCTCGCATCACAAGCAGGGCGAAAACTCGGGTCAGGGCGTGAAGGGCCTCAAGTCGCTCGGTGTTCGGGAACTCAACTACCGTATGGCGTTCCTGGCATGCTCGGTGCAGGCCACTTCGACTCGCTTCGGCGGCACAGACTTGCCTATGAGCGAGGTCACCGCCGAGGACATGAAGGCGCGCATGACCGAGGACGAGTGGAACAAAGTGTACGAAATGTCGCGCGACACGAAGCTCTACCAGAATCTCATAAACAGCCTGTTCCCCTCGATTTACGGAAACGACGAGGTCAAGCGCGGAGTCTTGCTGCAGCTTTTCGGAGGAGTCGGTAAGACCACGCACGAGAAGACGACGCTGCGTGGCGACATCAACGTGTGCATTGTCGGCGATCCCTCAACGGCAAAGTCCCAGCTGCTGAAGCAAGTCACTGATTTCTCGCCGCGCGCAGTCTACACTTCAGGAAAGGCGTCGTCCTCGGCCGGTCTCACCGCGGCCGTCGTCCGCGACGAGGAGAGCTTCGACTTCGTCATCGAGGCCGGTGCCCTCATGCTCGCCGACAACGGCATTTGCTGCATCGACGAGTTCGACAAGATGGACCCGCGCGATCAAGTCGCGATCCACGAAGCCATGGAGCAGCAGACCATTTCGATTGCGAAGGCGGGAGTTCGTGCGACGCTCAATGCGAGAACCTCGATTTTGGCGGCCGCCAATCCCATCAACGGCCGCTACGATCGATCGAAGTCGCTGCAGCAGAACATCATGCTCTCGGCCCCGATCATGTCGCGCTTCGATCTCTTCTTCATCCTCGTCGATGAGTGCAACGAGATGGTCGACTACGCCATCGCGAGGAAGATTGTCGACCTTCACACCGGCGCGCCGCAGACGACAATCGAGCAGGTGTACCAGCGCGAGGACGTGTTGCGCTACATAACTTTCGCTCGCCAATTCAAGCCGATGATATCGAAGGAGTCGATGAAGCTTCTCGTCGAAAACTACAGCCATTTGCGACAGCGCGACGTCGGCACGACCGGAAAGAGCACATGGCGAATCACCGTTCGTCAGCTCGAGAGCATGATTCGCTTGAGCGAGGCCCAAGCCAAAATGGAGTGCTCCGGCGAAGTTCTTCCCCGGCACGTCAACGAGGCCTATCGGCTGCTGAACAAGTCAATCATTCGCGTCGAACAGCCGGACATTCATCTCGGCGATGATGAGAACATGATGGAGGTGGATGAGACGCCCGAAAACGGAAACGGACATCACGAAAACGGAGAGAACGGCGATGGCGAGGAGCACGAACCGACGGCGGCGGCGAAAAAGACTTTCTCGCTCACATTCGATGAGTACAAGAACCTCTCGAACATGCTCATTCTTCATCTGCGCGAAGAGGAGTCGCGGTGCATCGCTGCCGGAACTGACACCGAGGGAATTAAGAAGAGCGAGCTGGTCCAGTGGTATTTGGAGCAAATTCAGGACATGCTCGAGTCGGAGGATGACCTCATCGAGCGCAAAATGCTCGTCGAACGTCTCATTGAGCGACTCATTACTCACGATCAGGTGCTTATTCCGCTGAAAACAACCGAACTGAAACAGAAGGGAAAAGAGGTCGTCGAACAAACAGACGACTTCGATCCAAACGATCCCTTCCTCATGGTGCATCCGAATTACGTTGTCGAAAAG
Protein: 819 (aa)
MDVADTHAGRLLVKDEVALRCQKLFSDFLEEYKEDGEVKYLRSAMELQNPDRFTLEVNFEDVEKYNQYLSTAIIEEYYRIYPFLCQAVSNFVKDRAESKKSKECYVAFTDVPTRHKVRELTTAKIGTLIRISGQVVRTHPVHPELVTGTFLCMDCQTEIRDVEQQFKFTNPTICRNPVCSNRRRFMLEVDKSLFVDFQKVRIQETQAELPRGAIPRSVEIILRAENVESVQAGDRYDFTGTLIVVPDVGSIQLPGAKADVRSHHKQGENSGQGVKGLKSLGVRELNYRMAFLACSVQATSTRFGGTDLPMSEVTAEDMKARMTEDEWNKVYEMSRDTKLYQNLINSLFPSIYGNDEVKRGVLLQLFGGVGKTTHEKTTLRGDINVCIVGDPSTAKSQLLKQVTDFSPRAVYTSGKASSSAGLTAAVVRDEESFDFVIEAGALMLADNGICCIDEFDKMDPRDQVAIHEAMEQQTISIAKAGVRATLNARTSILAAANPINGRYDRSKSLQQNIMLSAPIMSRFDLFFILVDECNEMVDYAIARKIVDLHTGAPQTTIEQVYQREDVLRYITFARQFKPMISKESMKLLVENYSHLRQRDVGTTGKSTWRITVRQLESMIRLSEAQAKMECSGEVLPRHVNEAYRLLNKSIIRVEQPDIHLGDDENMMEVDETPENGNGHHENGENGDGEEHEPTAAAKKTFSLTFDEYKNLSNMLILHLREEESRCIAAGTDTEGIKKSELVQWYLEQIQDMLESEDDLIERKMLVERLIERLITHDQVLIPLKTTELKQKGKEVVEQTDDFDPNDPFLMVHPNYVVEK
| Type | Start | End | Length |
| CDS |
43719 |
45939 |
2221 |
| CDS |
46001 |
46144 |
144 |
| CDS |
46203 |
46294 |
92 |
| intron |
45940 |
46000 |
61 |
| intron |
46145 |
46202 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850585 |
DNA replication licensing factor Mcm6 [Culex quinquefasciatus] gb|EDS32330.1| DNA replication licensing factor Mcm6 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR001208 |
Mini-chromosome maintenance, DNA-dependent ATPase |
|
| InterPro |
IPR018525 |
Mini-chromosome maintenance, conserved site |
|
| InterPro |
IPR008049 |
Mini-chromosome maintenance complex protein 6 |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(BP) |
GO:0006270 |
DNA-dependent DNA replication initiation |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Pfam |
PF00493.18 |
MCM2/3/5 family |
4.9e-137 |
| Pfam |
PF07726.6 |
ATPase family associated with various cellular activities (AAA) |
1.4e-05 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
7.6e-05 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.0027 |
| Pfam |
PF04774.10 |
Hyaluronan / mRNA binding family |
0.061 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
4e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB19871-PA |
| A. gambiae |
AGAP010219 |
| T. castaneum |
TC011200 |
| A. aegypti |
AAEL012546 |
| C. quinquefasciatus |
CPIJ009047 |
| S. invicta |
SI2.2.0_09209 |
| H. melpomene |
HMEL006166-PA |
| P. humanus |
PHUM105080-PA |
| B. mori |
BGIBMGA000828-TA |
| M. musculus |
ENSMUSG00000026355 |
| P. vanderplanki |
Pv.09025 |
| N. vitripennis |
NV13866-PA |
| D. plexippus |
DPOGS215555PA |
| D. melanogaster |
FBgn0025815 |
| H. sapiens |
ENSP00000264156 |