MidgeBase gene description page [Pn.12987]
Outline
| Gene ID | Pn.12987 |
| Type | Protein coding gene |
| Scaffold | PnScaf18171 |
| Start | 33569 |
| End | 34563 |
| Direction | - |
Sequence
Transcript: 801 (bp)
ATGGCTCGCAGATATGATTCAAGAACTACAATCTTCTCGCCAGAAGGTCGTCTGTATCAAGTAGAGTATGCTATGGAAGCTATCTCGCATGCAGGCACTTGCTTGGGCATTTTGGCAAAAGACGGAATCTTGCTGGCTGCAGAACGTCGAAACATCAACAAACTCCTCGACAACAGCATCTTCGCCGAGAAGATTTACAGATTGAACGAAGACATGGTTTGTTCAGTTGCCGGAATTACATCCGACGCGAATGTTCTCACAAACGAGCTGCGCCTGATTGCACAGCGATACCAGCTTCAGTATGACGAACCGATTCCGGTCGAGCAGTTGGTTTCGAGCTTATGTGATTTGAAGCAAGCCTACACCCAGTACGGAGGAAAACGGCCGTTTGGCGTCTCAATCCTGTACATGGGCTGGGACAAGCACTACGGCTATCAACTGTATCAGTCGGACCCGAGCGGAAACTACAGCGGCTGGAAGGCGACTTGCATCGGAAACAACGCTGCTGCCGCCATTTCTGTGCTGAAGCAAGAGCTGGGCGATAGCCCAATTTCGCTCGCCGAGGCCGAAGACTTGGCCATCAAAGTTCTATCGAAAACTCTGGACATGACAAAGCTGTCGTCGGAGAAGATTGAGATGTCAACACTGTCGCGAACTGACATCGGCGAAACCAAGATTAAGATCCTCTCAAACCCCGAAGTCGACAAGTTGATTGCGAAGTACGAGAAGATCCAGGCTGAGGAGGAAGCCGCAAAGAAGGAGAGACTGGCTCAACAGCAGGCACAGCAACAATCCCAGTCT
Protein: 267 (aa)
MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGILLAAERRNINKLLDNSIFAEKIYRLNEDMVCSVAGITSDANVLTNELRLIAQRYQLQYDEPIPVEQLVSSLCDLKQAYTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYSGWKATCIGNNAAAAISVLKQELGDSPISLAEAEDLAIKVLSKTLDMTKLSSEKIEMSTLSRTDIGETKIKILSNPEVDKLIAKYEKIQAEEEAAKKERLAQQQAQQQSQS
| Type | Start | End | Length |
| CDS |
33572 |
33865 |
294 |
| CDS |
33927 |
34430 |
504 |
| CDS |
34561 |
34563 |
3 |
| intron |
33866 |
33926 |
61 |
| intron |
34431 |
34560 |
130 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315057 |
AGAP004960-PA [Anopheles gambiae str. PEST] gb|EAA10351.5| AGAP004960-PA [Anopheles gambiae str. PEST] |
1e-115 |
| InterPro |
IPR016050 |
Proteasome, beta-type subunit, conserved site |
|
| InterPro |
IPR000426 |
Proteasome, alpha-subunit, N-terminal domain |
|
| InterPro |
IPR001353 |
Proteasome, subunit alpha/beta |
|
| InterPro |
IPR023332 |
Proteasome A-type subunit |
|
| Gene Ontology(BP) |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
| Gene Ontology(BP) |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
| Gene Ontology(CC) |
GO:0019773 |
proteasome core complex, alpha-subunit complex |
|
| Gene Ontology(CC) |
GO:0005839 |
proteasome core complex |
|
| Gene Ontology(MF) |
GO:0004175 |
endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004298 |
threonine-type endopeptidase activity |
|
| Pfam |
PF00227.21 |
Proteasome subunit |
4.6e-58 |
| Pfam |
PF02186.10 |
TFIIE beta subunit core domain |
0.045 |
| Pfam |
PF10584.4 |
Proteasome subunit A N-terminal signature |
9.9e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM289640-PA |
| M. musculus |
ENSMUSG00000032301 |
| S. invicta |
SI2.2.0_09740 |
| H. sapiens |
ENSP00000453080 |
| B. mori |
BGIBMGA001915-TA |
| H. sapiens |
ENSP00000453523 |
| H. sapiens |
ENSP00000044462 |
| D. plexippus |
DPOGS202926PA |
| A. aegypti |
AAEL010087 |
| N. vitripennis |
NV17945-PA |
| C. quinquefasciatus |
CPIJ010893 |
| P. vanderplanki |
Pv.10027 |
| H. sapiens |
ENSP00000453829 |
| T. castaneum |
TC008727 |
| H. sapiens |
ENSP00000453887 |
| H. sapiens |
ENSP00000453802 |
| A. mellifera |
GB11482-PA |
| D. melanogaster |
FBgn0261394 |
| H. melpomene |
HMEL007874-PA |
| H. sapiens |
ENSP00000402118 |
| A. gambiae |
AGAP004960 |