MidgeBase gene description page [Pn.12972]
Outline
| Gene ID | Pn.12972 |
| Type | Protein coding gene |
| Scaffold | PnScaf18143 |
| Start | 74937 |
| End | 77303 |
| Direction | - |
Sequence
Transcript: 2364 (bp)
ATGAATCAGCAAGGGGAAAGCGCTAAACGACGAGAAAATTTAAATATCGTGAATCATATTGGTGGCCGCTTGAAGGAATTGAAAAAGTTGTACAACGATGTAGCAACGACGAAATCGGAAATGCTCATTCACCAGATGCTGCCAAATCACTTGAGACGTCGCGCTATGAGCCATAATGCTAAACGGCTTCCACAGCGGTACAGAAAGGCGCATACAAACCAAATGTCCAAGTCGGGCAGCGATGCAAAGAAGAAGAGGCCTTCAAGAAAATTTCGTCGTCGTCCGAGAAATTTGATGCTAGAGTACAATCGAAGAAATAGGAAGAACATCTGGCTAGAAACTCATATTTGGCATGCGAAACGCTTTCGAATGAAAAACTTGTGGGGCTACAGAGTTCCTTTCACACCAACGAACAAACGATATAGAGCTTCATATAAAGGCGCAAATCATCACTGTTTGCTTCAAGACATCAGCTACTACTCTTGCATAGAAATTTCGGGACTGCTCGACATCCTTCAGCAAGGATTTAAACGAATCACTTCACCCGAATGTGGGCTAACTTTGAATGCAAAATCATTCTTAAGTGGTACAAGAGAAGGAAAAGCAATGATCTTCAAAAGAGACTCTTACCCACTAAATGCAATTGCTGAAGTAAAATTTCTCTGGATGCCTCATATTGATGATAATGCAATGACGAAAACGATCTGGATCTTCATTCATCCCGGTGTTTACAAGGAAACTTTGCAAGAACTCAAAGAGCTCTTTGAAGCTTTTGATGGAAACTGCTCAAACCAAACAATGGCACTCACTCGAAACGCAAAGCATAAGAATGACAAGACATCCGTTGAAATATTGGAGCTCAAAGATACCTTAAATCGATTTCAACTCACTGGTCCATTCTCCAATGCAGTTCTCTTTAAATCTTTAAAATTGGCCTGCAACTCGGATGGAAATTGGGTAGAAAACTTGAGCCTACCCCACATTAAGGCTCGTTCTCAACAGAATCTGACATGGAATGATTTACAAAAAACGGGTTCTCACATGGAATTTAAAATGAATGGAGTTTTAGGTCTGGTTGTCCAAGATCCACGGGCTAATAAGTTGAAACAAGTCAAAGCTGTCAACAATGTCAATAGTTTTCAAAGTGGCAACTATCTCATTGATGTGTCTGAAAATGTTGCAATGTCTCCAATCTGGGACAAAAGTATTCGTGACGAACTCTTCAAAACGAAAATGACAACTAGCGAGCTATGTAAACTCCGCAATAAGAATCAATTACTACCTGGGATTGCGTCGTCTTTTGAATTGAATTTACAGCCAGTACCGATCTTACTCATTCAAAGGCCGTCAATTTCAAGTGACTTGCGGCAAAATGGGTTTGGTGGCGGATGGGATGTGATTATACCTTCTTCGTATGGTCTTCATTTTTGGCTGTCATTTGTAAAGTTTGGTGCCAAACCAATAGGACTAAATGAGCAAAACATGCTGTTTAATGAGATAGGATGCGACATCTCTTCTCCAGACTCGCTTTTGGGGAAAAAGGAACTCGATGAGATGAAAATCGACGAACGTGAGAAATATTTTCGGTTACCGCCCAACAAACGTACAAACTACAGAAAAATGAAAATCGCCTCACCCTTTAGCTGTCCTTTTGATAAATTAGTCAAAGAATGGGAATGTCCCGAAGACAAGGACTTTTACATTTTGAGAAATAGCTTTCTTTTAAGAGAGCTCGACAATTCGCTGTACAAAAAAATTAATTGCGAATTTGAAAAAATTGATTCAAATGCCTTAATTCCCATAATTTTGCCAAATGATGGAAGCAGAAATGACAGCCAGTTTAACATAATATGCGTGCCTAAGAAATGTGACATAAAAAAATCTCTACAACTTCAGTACTTTCGTATGAGGGATCCCGTTTATATTGAGACACCAGGAGACGATGAAAATTCTACAGTGAGAAAAAGCATGAAATTTCATCACAGTAAATTGCTAAAGAGATTGAGAAATAGACGAGTAAGGCTAAAGAGAAAATTGCAAGCTACTTCTGAATATTTTGTAAAAATACAAAAACCAAACACGGAAAAAATCATTGAGGAACACTTCAAGAAAATGTGTGAACTGTGGCTTCCTTCAAAACAACAATCGATCAGAAATCAGTGTTCACGTGAAGTCTTTGGATACATTGTCAAGTCAAGATTTTGCTTCTCAGAAGGTAGAGTCTGTGGCATCGGCTACGTAACACGCAATGGTCTAAGAGAGCTAATGAAAGTTTTCCAAAAGTTCAAAGGTCTCCAGCCCTTCGTTCTGACAAGAAGCACAAGCAGTCTGAATTATTATAAATCAAAAATTCATGTAAACGGA
Protein: 788 (aa)
MNQQGESAKRRENLNIVNHIGGRLKELKKLYNDVATTKSEMLIHQMLPNHLRRRAMSHNAKRLPQRYRKAHTNQMSKSGSDAKKKRPSRKFRRRPRNLMLEYNRRNRKNIWLETHIWHAKRFRMKNLWGYRVPFTPTNKRYRASYKGANHHCLLQDISYYSCIEISGLLDILQQGFKRITSPECGLTLNAKSFLSGTREGKAMIFKRDSYPLNAIAEVKFLWMPHIDDNAMTKTIWIFIHPGVYKETLQELKELFEAFDGNCSNQTMALTRNAKHKNDKTSVEILELKDTLNRFQLTGPFSNAVLFKSLKLACNSDGNWVENLSLPHIKARSQQNLTWNDLQKTGSHMEFKMNGVLGLVVQDPRANKLKQVKAVNNVNSFQSGNYLIDVSENVAMSPIWDKSIRDELFKTKMTTSELCKLRNKNQLLPGIASSFELNLQPVPILLIQRPSISSDLRQNGFGGGWDVIIPSSYGLHFWLSFVKFGAKPIGLNEQNMLFNEIGCDISSPDSLLGKKELDEMKIDEREKYFRLPPNKRTNYRKMKIASPFSCPFDKLVKEWECPEDKDFYILRNSFLLRELDNSLYKKINCEFEKIDSNALIPIILPNDGSRNDSQFNIICVPKKCDIKKSLQLQYFRMRDPVYIETPGDDENSTVRKSMKFHHSKLLKRLRNRRVRLKRKLQATSEYFVKIQKPNTEKIIEEHFKKMCELWLPSKQQSIRNQCSREVFGYIVKSRFCFSEGRVCGIGYVTRNGLRELMKVFQKFKGLQPFVLTRSTSSLNYYKSKIHVNG
| Type | Start | End | Length |
| CDS |
74940 |
77303 |
2364 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849525 |
ribonucleaseP/MRP protein subunit POP1 [Culex quinquefasciatus] gb|EDS30434.1| ribonucleaseP/MRP protein subunit POP1 [Culex quinquefasciatus] |
1e-171 |
| InterPro |
IPR012590 |
POPLD |
|
| InterPro |
IPR009723 |
Ribonuclease P/MRP, subunit POP1 |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(BP) |
GO:0001682 |
tRNA 5'-leader removal |
|
| Gene Ontology(MF) |
GO:0004526 |
ribonuclease P activity |
|
| Pfam |
PF08170.7 |
POPLD (NUC188) domain |
4.2e-17 |
| Pfam |
PF01571.16 |
Aminomethyltransferase folate-binding domain |
0.00013 |
| Pfam |
PF06978.6 |
Ribonucleases P/MRP protein subunit POP1 |
1.2e-39 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC011530 |
| A. aegypti |
AAEL009542 |
| P. vanderplanki |
Pv.03761 |
| A. gambiae |
AGAP012125 |
| N. vitripennis |
NV16167-PA |
| P. humanus |
PHUM044380-PA |
| D. melanogaster |
FBgn0026702 |
| C. quinquefasciatus |
CPIJ007891 |
| B. mori |
BGIBMGA011810-TA |
| A. mellifera |
GB12696-PA |
| S. invicta |
SI2.2.0_06509 |
| D. plexippus |
DPOGS213530PA |
| M. musculus |
ENSMUSG00000022325 |
| H. sapiens |
ENSP00000339529 |
| S. invicta |
SI2.2.0_07946 |
| H. melpomene |
HMEL007897-PA |
| H. sapiens |
ENSP00000385787 |