MidgeBase gene description page [Pn.12959]
Outline
| Gene ID | Pn.12959 |
| Type | Protein coding gene |
| Scaffold | PnScaf18143 |
| Start | 10837 |
| End | 13551 |
| Direction | + |
Sequence
Transcript: 2514 (bp)
ATGAGCCTTTTATACAATATCGGTGATTGGTTTACGTTAGGCCATGGAAACACGTATAGAAAAATCGAACTGTATTCAATGGATTTTCCTGAAGAAATGAACTTGGAGGAAATGAAAGTGTATGGAGCATCTTTTGGAGGCCCAATTGCAATAACAAGAAACATAAATGATTTGAAAAGAACAGGATTCACAACGAAGCCAATAATCTATATATTTTCATCATCCGGAAAATTGTTATCAAAAATAAATTGGAATTCTGGCGCTCTCCTCACTATGGGCTGGTCAGATTCGGAAGAGCTTCTGTGCATTCAAGAAAACGGAATAGTTTTGATTTATAACATGTTCGGACAGTATCAGCATAAATTCAGTATGGGTCAAGAAGCAACGGACACTCAAATAATTGATGGAAGAATTTATCCTAGCACACAAGGAACTGGAATTGCCGTCATGACTACACACTTTAGAATTTTTATTGCGAACAACTACAAGGATCCGAAGGTTCGACTTCTGCCCGAAATACCGAAATCCGTACTCGACCCCACAAGCTGGGCTGTTCTTGTTGAAGATCGGAAGACAGCCTGTTTAATTGCTCGAGAACAGGAGCTCTTCAAAGTCAAACAAGATGATAATATTTGTACAGCTGTGGGCATTTCATTTGATTTGGATTACAAAGCCATACGATTCATGTCTGTTTCGTACAATAATCGATGTGTCTGTTTCTACACAAATACGGGAATATTGTGGATGGGAACAAGTGATCTGAGAACAAAGTATTGTGAGTTTAATTGTGGACGAACCGAGATGCCAAAGCAAATTGAATGGTGTTCTGACGTCGATGATCCGACGCGTGCTGATGCTGTGGTTATCACTTATCCATCGATTCTGCTCATCGTCGGTATAAATGGAGACTCAAACATTTACACATATGATCCAGCGATTTTTCTGGTTCCAGAGAGTGATGGCGTTCGTGTGCTAACCAACAATTATCATGAACTCATTCAGAAAGTCCCTAAATGTGTTAGCAACATTTTTGGAATAAACATCTCTGAGCCGTCGAGCTTTCTGTTTGAAAGCTATCGAAAATTCTGTGAACGCAGTCATCAATCTGATGAGTATTTGTGTCTAATTATGGATAAAATTGAAACTGCCGTAGATGAATGCATAAGAGCTGCCGGTTTTGAATTTGATACAGAAACGCAAAAGAGCCTCATCAGTGCTGCCCACTTTGGAAAAGGTTTCATTCGCAGCCACAATCCCGACGAATATATAACGATGTGTAAAATGCTACGAGTTTTGAATGCAGTTAGATCTAACGAGGTAGGAATACCTTTGACAATATCCCAGTTTCAGCACTTGACTCCCGTCGTTCTTATCGATAGACTGGTCTTTCGCAAGCACTATAGTCTTGCTATTCAAATATCAAAGCATTTGAACCTGTCAGAATCACGGATTATGGAACATTGGGCATACCACAAAATAATGTACGACAAAAATGACAACGAAATCATCTCGAAGATAGCCGAAAAGTTTAAGGATCCAATAAAACTAGGAATTTCATTTTGCACAATTGCAAAGAGGGCTGAAGAGATTGGGAAAACTAAGCTTGCCATTCAATTGCTTGAGTTGGAACCTAACCAAAGTTTGCAAGTGCCGTTGTTAATAAAGTTGGGAGAAAACAAAAAAGCATTGCTGGCTGCAACGCAATCAGGTGATACTGATCTAATTTATATGGTTCTTATGCAACTTAAAGATCAAACACCGCTCTCTAAGTTTCAAATGATTATTAGAGAATTCCCCTTAGCGCAGAATCTATACAAGAAATATTGTTCGCTGAATAACATGACTGCACTAAAGGATATCCATTTGCAAGAGGACGATTTTCTTGCACAAGCTGAATTAGCGCTTGAAGAAGCTCTCGACAGTTATATTAAACTCGACTCATCACTGTTAGATATTTGTGGGAATTACAAGAAGGCACACAAAGATATTGAGGTCGAGATTTGTGATGACTATAGGAAGCTCATGAAGCAACAAAAGTCTTTGGAAGAGAAATATTCGAGAGCATTTTACGGACCATCTCTTCATGACACCGTAAAAGAACTTATGATTCTGGGAGATTTAAAATTAGCCGAGAAAATTAAAAATGACCACAAAATGTCAGAAAAGCATTTTTGGCATATAAAAGTCGAAGTTCTCGCAGGAAATTATCAATGGGATGAGCTCGATAAATTCTCCAAGTCAAAGAAATCTCCGATTGGTTATGAGCCATTTGTTGAGGCATGCCTCAAAGCGCGTAACATTAACGAGGCCAAAAAATATATAATCAAGTGCAGGGAAGATAAAAGAATTGTATGGTTCAATCGTGCTGGACTTTATGAGGACTCTGCCAAACTGGCCTTTGAGTTGCGCGACACACAGTCTCTGTTGAACATTCACAATATTGTCGCATCAACAAACGATAGTGCTTTGATTTCTAAAATTGAAAGTTATATCACCGCTACATCGCCTAAGAGA
Protein: 838 (aa)
MSLLYNIGDWFTLGHGNTYRKIELYSMDFPEEMNLEEMKVYGASFGGPIAITRNINDLKRTGFTTKPIIYIFSSSGKLLSKINWNSGALLTMGWSDSEELLCIQENGIVLIYNMFGQYQHKFSMGQEATDTQIIDGRIYPSTQGTGIAVMTTHFRIFIANNYKDPKVRLLPEIPKSVLDPTSWAVLVEDRKTACLIAREQELFKVKQDDNICTAVGISFDLDYKAIRFMSVSYNNRCVCFYTNTGILWMGTSDLRTKYCEFNCGRTEMPKQIEWCSDVDDPTRADAVVITYPSILLIVGINGDSNIYTYDPAIFLVPESDGVRVLTNNYHELIQKVPKCVSNIFGINISEPSSFLFESYRKFCERSHQSDEYLCLIMDKIETAVDECIRAAGFEFDTETQKSLISAAHFGKGFIRSHNPDEYITMCKMLRVLNAVRSNEVGIPLTISQFQHLTPVVLIDRLVFRKHYSLAIQISKHLNLSESRIMEHWAYHKIMYDKNDNEIISKIAEKFKDPIKLGISFCTIAKRAEEIGKTKLAIQLLELEPNQSLQVPLLIKLGENKKALLAATQSGDTDLIYMVLMQLKDQTPLSKFQMIIREFPLAQNLYKKYCSLNNMTALKDIHLQEDDFLAQAELALEEALDSYIKLDSSLLDICGNYKKAHKDIEVEICDDYRKLMKQQKSLEEKYSRAFYGPSLHDTVKELMILGDLKLAEKIKNDHKMSEKHFWHIKVEVLAGNYQWDELDKFSKSKKSPIGYEPFVEACLKARNINEAKKYIIKCREDKRIVWFNRAGLYEDSAKLAFELRDTQSLLNIHNIVASTNDSALISKIESYITATSPKR
| Type | Start | End | Length |
| CDS |
10837 |
10895 |
59 |
| CDS |
10955 |
11144 |
190 |
| CDS |
11204 |
13323 |
2120 |
| CDS |
13404 |
13548 |
145 |
| intron |
10896 |
10954 |
59 |
| intron |
11145 |
11203 |
59 |
| intron |
13324 |
13403 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001842734 |
vacuolar protein sorting vps16 [Culex quinquefasciatus] gb|EDS27436.1| vacuolar protein sorting vps16 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR006926 |
Vps16, N-terminal |
|
| InterPro |
IPR016534 |
Vacuolar protein sorting-associated protein 16 |
|
| InterPro |
IPR006925 |
Vps16, C-terminal |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Pfam |
PF04840.7 |
Vps16, C-terminal region |
2.9e-89 |
| Pfam |
PF04841.8 |
Vps16, N-terminal region |
4.1e-115 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0261241 |
| T. castaneum |
TC001384 |
| P. vanderplanki |
Pv.05447 |
| H. melpomene |
HMEL007914-PA |
| C. quinquefasciatus |
CPIJ801492 |
| A. aegypti |
AAEL010559 |
| P. humanus |
PHUM412760-PA |
| H. sapiens |
ENSP00000417031 |
| A. mellifera |
GB10207-PA |
| A. gambiae |
AGAP000529 |
| D. plexippus |
DPOGS208223PA |
| H. sapiens |
ENSP00000369808 |
| H. sapiens |
ENSP00000369810 |
| S. invicta |
SI2.2.0_00468 |
| B. mori |
BGIBMGA006411-TA |
| H. sapiens |
ENSP00000369836 |
| M. musculus |
ENSMUSG00000027411 |