MidgeBase gene description page [Pn.12955]
Outline
| Gene ID | Pn.12955 |
| Type | Protein coding gene |
| Scaffold | PnScaf18143 |
| Start | 3016 |
| End | 4317 |
| Direction | - |
Sequence
Transcript: 852 (bp)
ATGATTCGTGACCGTCTGTATGAGTTAAAAACGATGACGGTTGATGAGGCTATTGAAATTGAAGTAGACACAGCACAAGACGACGAACTTAATAAGATATTAAATAGGTTTTTAGCTATTCGAGAGCAAGTTGAGCTAATTCGTGAGAATATCGACGCAATGAAAAATCTAATCAATGAACAAAAATTTCACTACAAGGATAAGAATATCAGAGACCAAATGGAGAATTTAATAAGTGACAGTTTATCGAAATCAAAAAACGTACACAACTCGATTAAGGGATATCAAGAAGAGCTAACTACGCCATGTCGATCGCATACAATATTCAGAATAAAGAACATGCAATTGGCGTTTATTAAGAATGAATATTTGAATGTTTATCGAGAGCACACTCAGTTTGTAGAGAAATACGAAGAGAAACTTAAAAAAATATTAAAACGGGAAGCACAAATTATGTCTCGAAACGTGTCAATTGAGGAAACAGAAGCATTGATCGATGATAAAGAGCAAGTTCCATCACTATTTGTTGGAAATATTTTAGAGGAAACTCAAAAGGCACAGAGTGAGTTGCGGGAAATTGTTCAAAGACACAACATGCTTTTGTCTTTGGAAAAAACGCTTGAGCAAGTGAGGGACATGTTCTTTCAGATCTCAACATATGTCATGGAGCAGGGATCATTGATTCAAGTCATTGAGTACGAGACAGAAAACGCAACCACCTACGTCGATAAGGGAGGCAATGAATTGGAACAAGCCCGGGAGCTGCAAATTAAAGCCCTTAAGAAGAAAACGTACATTCTGATAATTCTTCTCATAGTATTAGGAATAATTATTTTTATTCTCGTAATAACA
Protein: 284 (aa)
MIRDRLYELKTMTVDEAIEIEVDTAQDDELNKILNRFLAIREQVELIRENIDAMKNLINEQKFHYKDKNIRDQMENLISDSLSKSKNVHNSIKGYQEELTTPCRSHTIFRIKNMQLAFIKNEYLNVYREHTQFVEKYEEKLKKILKREAQIMSRNVSIEETEALIDDKEQVPSLFVGNILEETQKAQSELREIVQRHNMLLSLEKTLEQVRDMFFQISTYVMEQGSLIQVIEYETENATTYVDKGGNELEQARELQIKALKKKTYILIILLIVLGIIIFILVIT
| Type | Start | End | Length |
| CDS |
3019 |
3336 |
318 |
| CDS |
3392 |
3471 |
80 |
| CDS |
3545 |
3737 |
193 |
| CDS |
3805 |
3957 |
153 |
| CDS |
4146 |
4220 |
75 |
| CDS |
4285 |
4317 |
33 |
| intron |
3337 |
3391 |
55 |
| intron |
3472 |
3544 |
73 |
| intron |
3738 |
3804 |
67 |
| intron |
3958 |
4145 |
188 |
| intron |
4221 |
4284 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660092 |
syntaxin 4, putative [Aedes aegypti] gb|EAT38669.1| syntaxin 4, putative [Aedes aegypti] |
9e-55 |
| InterPro |
IPR000727 |
Target SNARE coiled-coil domain |
|
| InterPro |
IPR010989 |
t-SNARE |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF05739.14 |
SNARE domain |
1.9e-11 |
| Pfam |
PF12022.3 |
Domain of unknown function (DUF3510) |
0.036 |
| Pfam |
PF00482.18 |
Type II secretion system (T2SS), protein F |
0.0014 |
| Pfam |
PF00804.20 |
Syntaxin |
0.0021 |
| Pfam |
PF00142.13 |
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family |
0.077 |
| Pfam |
PF09373.5 |
Pseudomurein-binding repeat |
0.16 |
| Pfam |
PF00675.15 |
Insulinase (Peptidase family M16) |
2.7 |
| Pfam |
PF14278.1 |
Transcriptional regulator C-terminal region |
8.4 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC012094 |
| C. quinquefasciatus |
CPIJ014020 |
| A. aegypti |
AAEL009458 |
| A. gambiae |
AGAP001030 |
| D. plexippus |
DPOGS202867PA |
| B. mori |
BGIBMGA001742-TA |
| D. melanogaster |
FBgn0024980 |
| P. vanderplanki |
Pv.05451 |
| H. melpomene |
HMEL008571-PA |