MidgeBase gene description page [Pn.12942]
Outline
| Gene ID | Pn.12942 |
| Type | Protein coding gene |
| Scaffold | PnScaf18098 |
| Start | 2672 |
| End | 6499 |
| Direction | - |
Sequence
Transcript: 2064 (bp)
ATGGACACCACAAAAATCGAAATCAAAAACATTAATGAATTATTAAATCGAGACCGGTATTTGAAGCCTTTCGAGACGGAAATTCGCAGAAGACACGGATGCTTGCAGCAGTGGCTGAGAACGTTTGAAGAATCGGAGGGCGGCATCGACAACTTCACAAAAGGATACGAGTATTATGGAGTACACGTGCAGGCCGACAACTCGGTCGTAGCGAGAGAATGGGCACCTGGTGCTGTCGAGCTTTATCTCACCGGGGATTTCAATAATTGGCAATGGGAGGCGACACCGTATAAGAAGTTAGAATTTGGAAAGTGGGAATTAATTTTGCCGCCGCGAGCCGATGGCAGCTGTCAAATTGCTCATCTCAGCGAGCTCAAGGTGATTGTGCGAAAGAGCGACTCCCAGTTGGTGCCGCGACTCTCGCCCTGGGCGACCTACGTCGTGCAGCCAACGGATCTCTCATTCGGCTCCAACTACAAGCAGCTCCTCTACAATCCGCCTCAGTCGACACGCCACACATTTCAATACAAGAAGCCGGCAGTCGTGCCGAAATCGCTGCGAATTTACGAGTGCCATGTGGGAATCGCAACCGAGAAACTCGAGGTCGGATCGTATCGAAATTTCGCTGACAATGTCATTCCGCGAATTGTGCGTCAGGGCTACAATACCATCCAAGTGATGGCCATCATGGAACATGCTTACTACGCCAGTTTCGGCTATCAAGTGACCAGCTTCTTCGCCGCGTCATCACGTTTCGGAACGCCCGACGACCTCAAATATCTCATCGATGTCGCTCATAAAAACAACTTAATCGTCCTCCTTGATGTCGTTCACTCGCACGCCAGCAAGAACGTCCTCGATGGCCTCAACGAGTTCGACGGCACCGACTCTTGCTATTTTCATGCACCGCCGCGCGGCGAACACGCTCTGTGGGACTCGCGGCTCTTCAACTACGCCGCCTACGAGGTGCTGCGCTTCCTCCTCTCTAACCTGCGCTGGTGGAAGGACGAGTACAACTTTGACGGATATCGATTCGATGGTGTTACCTCGATGCTCTATCACAATCACGGCATCGGTGCGGGCTTCAGCGGCGACTACAGTGAATATTTCGGTCTGAATGTGGACACAGATGCGCTCACTTATTTGGCACTCGCAAACAAAATCCTCCATGACATGGACCCGAATGTCATCACGATTGCCGAGGACGTGTCCGGCATGCCGACGCTCTGTTGTCCAATCGACGAGGGCGGCATCGGCTTCGATTACCGCCTGGGCATGGCCATTCCGGACAAATGGATTGAGATCCTGAAGGAGAAGCGCGACGAAGACTGGAACATGGGAAATATCATTCACACGCTCTCAAATCGCAGATGGAAGGAGAAAACTGTTGCGTACGCAGAGTCGCACGACCAAGCACTGGTTGGCGACAAAACACTCGCTTTTTGGCTGATGGACAAAGAGATGTACACGAGCATGTCCGTGCTGTCGCCACCTAATTTGATAATCGACCGAGGCACGGCTCTCCACAAAATCATCCGACTCATTACGCACACACTTGGCGGAGAAGCCTACCTCAATTTCATGGGCAATGAGTTCGGCCATCCAGAGTGGCTCGATTTTCCAAGAGTCGGCAACAATCAGTCCTACCATTACTGCAGACGGCAGTGGAATCTTGTCGATGATCAGACTCTCAGATATAAATTCCTGAATGCGTTTGATAAGGCCATGAATGAGGCAGAGGAAAAGTACGGCTGGCTTAATAGTAATCCCGGCTACGTGACATGGGCACACGAGGGCGACAAGATAATCAGTTTCGAGCGCAACGGACACATATTCGTGTTCAACTTTCACATGGAACGAGCCTTTACGGATTACCGCATCGGCGTGGAACGACCGGGCAGCTATAAAATTGTGCTGAGCTCGGACGACGAGGCTTTCGGTGGTTTCAATCGTGTGGACACCAGCCTTACGCACGTTACCGTGCCGGAGGGTCATGCTGGCCGCAGCCAATTCATTCACACTTACTTGCCGCCCCGAACCGGCTTCGTTTTCGTGAGACTTGGC
Protein: 688 (aa)
MDTTKIEIKNINELLNRDRYLKPFETEIRRRHGCLQQWLRTFEESEGGIDNFTKGYEYYGVHVQADNSVVAREWAPGAVELYLTGDFNNWQWEATPYKKLEFGKWELILPPRADGSCQIAHLSELKVIVRKSDSQLVPRLSPWATYVVQPTDLSFGSNYKQLLYNPPQSTRHTFQYKKPAVVPKSLRIYECHVGIATEKLEVGSYRNFADNVIPRIVRQGYNTIQVMAIMEHAYYASFGYQVTSFFAASSRFGTPDDLKYLIDVAHKNNLIVLLDVVHSHASKNVLDGLNEFDGTDSCYFHAPPRGEHALWDSRLFNYAAYEVLRFLLSNLRWWKDEYNFDGYRFDGVTSMLYHNHGIGAGFSGDYSEYFGLNVDTDALTYLALANKILHDMDPNVITIAEDVSGMPTLCCPIDEGGIGFDYRLGMAIPDKWIEILKEKRDEDWNMGNIIHTLSNRRWKEKTVAYAESHDQALVGDKTLAFWLMDKEMYTSMSVLSPPNLIIDRGTALHKIIRLITHTLGGEAYLNFMGNEFGHPEWLDFPRVGNNQSYHYCRRQWNLVDDQTLRYKFLNAFDKAMNEAEEKYGWLNSNPGYVTWAHEGDKIISFERNGHIFVFNFHMERAFTDYRIGVERPGSYKIVLSSDDEAFGGFNRVDTSLTHVTVPEGHAGRSQFIHTYLPPRTGFVFVRLG
| Type | Start | End | Length |
| CDS |
2675 |
2975 |
301 |
| CDS |
3056 |
3140 |
85 |
| CDS |
3464 |
3603 |
140 |
| CDS |
3850 |
4348 |
499 |
| CDS |
4702 |
5478 |
777 |
| CDS |
5729 |
5898 |
170 |
| CDS |
6408 |
6499 |
92 |
| intron |
2976 |
3055 |
80 |
| intron |
3141 |
3463 |
323 |
| intron |
3604 |
3849 |
246 |
| intron |
4349 |
4701 |
353 |
| intron |
5479 |
5728 |
250 |
| intron |
5899 |
6407 |
509 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001959638 |
GF11944 [Drosophila ananassae] gb|EDV36460.1| GF11944 [Drosophila ananassae] |
0.0 |
| InterPro |
IPR014756 |
Immunoglobulin E-set |
|
| InterPro |
IPR004193 |
Glycoside hydrolase, family 13, N-terminal |
|
| InterPro |
IPR015902 |
Glycoside hydrolase, family 13 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR006048 |
Alpha-amylase, C-terminal all beta |
|
| InterPro |
IPR006589 |
Glycosyl hydrolase, family 13, subfamily, catalytic domain |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
|
| InterPro |
IPR006047 |
Glycosyl hydrolase, family 13, catalytic domain |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00128.19 |
Alpha amylase, catalytic domain |
1.4e-12 |
| Pfam |
PF02922.13 |
Carbohydrate-binding module 48 (Isoamylase N-terminal domain) |
7.9e-10 |
| Pfam |
PF02806.13 |
Alpha amylase, C-terminal all-beta domain |
6.8e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB10129-PA |
| A. gambiae |
AGAP010428 |
| A. mellifera |
GB12103-PA |
| H. sapiens |
ENSP00000419638 |
| S. invicta |
SI2.2.0_12923 |
| M. musculus |
ENSMUSG00000022707 |
| H. sapiens |
ENSP00000410833 |
| B. mori |
BGIBMGA007451-TA |
| P. vanderplanki |
Pv.17595 |
| D. melanogaster |
FBgn0053138 |
| H. melpomene |
HMEL008356-PA |
| N. vitripennis |
NV13888-PA |
| C. quinquefasciatus |
CPIJ006166 |
| A. aegypti |
AAEL011686 |
| T. castaneum |
TC004619 |
| A. aegypti |
AAEL010602 |
| D. plexippus |
DPOGS215494PA |
| P. vanderplanki |
Pv.03290 |
| P. humanus |
PHUM033940-PA |