MidgeBase gene description page [Pn.12939]
Outline
| Gene ID | Pn.12939 |
| Type | Protein coding gene |
| Scaffold | PnScaf18056 |
| Start | 9513 |
| End | 11365 |
| Direction | - |
Sequence
Transcript: 1263 (bp)
ATGCGCATACTTGCATGCAAGAGCCCTAATTATAATGCAACGGCCGGGCGTTCTATTCGAGGAACACTTATTCCATTGTCTGGAGGAGACTATGCTTATATTTCGGCGGCGTTTGGACCACTTCCGGCGTTTCTTTATCTGTGGGTTGCACTACTGATTCTAGTGCCCACTGGTAATGCAATTACAGCTTTAACGTTTGCCCAGTATCTGCTTAAACCAAATTGGCCTGCTTGTGATCCGCCATATAGTGCAGTAACTCTCGTTGCATGCTTGGTCACGATCGTTCTCACGGCAATAAATTGTTATAATGTTAAATGGGTGACTCGAGTGACAGATGTCTTCACAGGAACAAAGGTTTTTGCTTTGCTGGTCATTTTCTTTGCTGGAGCATGGTATTTGATGAATGGTCACACAGAGCTCTTGCAGCAACCGTTTGAAAATTCGACATCATCGCCTGGACGTATAGCTTTGGCCTTTTATAACGGTCTTTTTAGCTATTCAGGATGGAATTACTTGAATTTTGTGACAGAAGAGCTTAAGGATCCTTACAAGAATCTTCCAAGAGCCATTTGCATAAGTATTCCAATGGTGACAATCATCTATGTTATAACAAACGTTGCTTACTTCGCGGTGCTTCCAACAAACGAGATTCAATCGTCTCTTGCTGTCGCTGTGACATTTGGCGATAAAATGTTACCGAGTTTCCTAGCTTGGATGATGCCATTATTTGTTGCCTGCTCAACTTTTGGTTCACTTAATGGGGCAATTTTTGCAAGCTCCCGGCTATTCTTTGTCGGTGCTCGTAACGGTCATCTACCTGCAGCAATTTCACTAATAAACATTAAGTGCCTTACCCCGATCCCTTCAATTCTCTTCATGTGCCTGCTTACCATCATGCTTCTATTCATACCTGATGTCTATGCATTGATCAATTATGTGAGCTTTGTTGAAGCTCTTTTCATTTTGATGTCTATTTCTGGACTTTTATATTTACGCTACAAAAGGCCAGACGCACATCGCCCAATAAAGGTTAATCTCATTTTTCCAATTATTTTTATGCTGACTTGTAGTTTTCTTGTAATCGCCTCGTGCTTCCAAAGTCCTTTAGAAGTGGGCATTGGCTGCTTAGTAATTGCTTCAGGAATTCCTGTATACTACGCCACGATTCATCGACCTATTGGCTGGCTTACACGACTATCGTCGCGATTTAACATTTTCTGCTCAAAGTTATTTCTTTGTATGCCAAATCAAGAAAAGGATGAT
Protein: 421 (aa)
MRILACKSPNYNATAGRSIRGTLIPLSGGDYAYISAAFGPLPAFLYLWVALLILVPTGNAITALTFAQYLLKPNWPACDPPYSAVTLVACLVTIVLTAINCYNVKWVTRVTDVFTGTKVFALLVIFFAGAWYLMNGHTELLQQPFENSTSSPGRIALAFYNGLFSYSGWNYLNFVTEELKDPYKNLPRAICISIPMVTIIYVITNVAYFAVLPTNEIQSSLAVAVTFGDKMLPSFLAWMMPLFVACSTFGSLNGAIFASSRLFFVGARNGHLPAAISLINIKCLTPIPSILFMCLLTIMLLFIPDVYALINYVSFVEALFILMSISGLLYLRYKRPDAHRPIKVNLIFPIIFMLTCSFLVIASCFQSPLEVGIGCLVIASGIPVYYATIHRPIGWLTRLSSRFNIFCSKLFLCMPNQEKDD
| Type | Start | End | Length |
| CDS |
9516 |
9637 |
122 |
| CDS |
9705 |
9857 |
153 |
| CDS |
9917 |
10025 |
109 |
| CDS |
10113 |
10440 |
328 |
| CDS |
10497 |
10986 |
490 |
| CDS |
11305 |
11365 |
61 |
| intron |
9638 |
9704 |
67 |
| intron |
9858 |
9916 |
59 |
| intron |
10026 |
10112 |
87 |
| intron |
10441 |
10496 |
56 |
| intron |
10987 |
11304 |
318 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002047992 |
GJ11604 [Drosophila virilis] gb|EDW70334.1| GJ11604 [Drosophila virilis] |
1e-173 |
| InterPro |
IPR002293 |
Amino acid/polyamine transporter I |
|
| Gene Ontology(BP) |
GO:0003333 |
amino acid transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0015171 |
amino acid transmembrane transporter activity |
|
| Pfam |
PF13520.1 |
Amino acid permease |
1.4e-54 |
| Pfam |
PF00324.16 |
Amino acid permease |
1.5e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL012437-PA |
| D. plexippus |
DPOGS203336PA |
| N. vitripennis |
NV14792-PA |
| S. invicta |
SI2.2.0_09992 |
| H. sapiens |
ENSP00000416398 |
| H. sapiens |
ENSP00000434345 |
| A. mellifera |
GB19129-PA |
| D. plexippus |
DPOGS211190PA |
| S. invicta |
SI2.2.0_02824 |
| M. musculus |
ENSMUSG00000022180 |
| H. sapiens |
ENSP00000465421 |
| P. humanus |
PHUM050830-PA |
| A. gambiae |
AGAP011386 |
| H. sapiens |
ENSP00000391577 |
| B. mori |
BGIBMGA003856-TA |
| N. vitripennis |
NV13760-PA |
| M. musculus |
ENSMUSG00000040010 |
| P. vanderplanki |
Pv.14584 |
| T. castaneum |
TC013186 |
| P. humanus |
PHUM136660-PA |
| D. melanogaster |
FBgn0002778 |
| A. aegypti |
AAEL014161 |
| D. melanogaster |
FBgn0039487 |
| H. melpomene |
HMEL017938-PA |
| H. sapiens |
ENSP00000253188 |
| B. mori |
BGIBMGA003178-TA |
| A. gambiae |
AGAP003425 |
| H. sapiens |
ENSP00000320378 |
| H. sapiens |
ENSP00000261622 |
| H. sapiens |
ENSP00000435114 |
| A. aegypti |
AAEL002525 |
| P. vanderplanki |
Pv.13909 |
| T. castaneum |
TC000687 |
| C. quinquefasciatus |
CPIJ015772 |