MidgeBase gene description page [Pn.12922]
Outline
| Gene ID | Pn.12922 |
| Type | Protein coding gene |
| Scaffold | PnScaf17980 |
| Start | 7488 |
| End | 8318 |
| Direction | - |
Sequence
Transcript: 765 (bp)
ATGCAAAGTTCAAACAGTGATGGTGGCATGCGAAAGAGACGAATCACCAACGGCTATATTGCAGACACGGGCTCGCATTTCCTGCCCTTCTACACGCTCATTTACGTGCGAAAGATCACGAATGTCTTCAATATGTGTGCAGGTTCCATCATTTCCGAGCAGTTTGTTCTCAGTGCAGGTCATTGCTTTGAGAATGTGGTAGAAGTCTTCATTCTAGCCGGATTCAAGAGCAGTCAGATCGAGTCTTATACATTCTTCGATCAAATTCCCTCGAGCAATGTGATTATGCATCCAAACTACAATACCACAACGATAGCTAACGACATTGCGCTCGTGAAGTTGTCTCGCAATCTCACCTTCAGCTTAGTCATTCAGAAAATCAAGCTTCCGTCGGCCACGTCAACTTTCCTCAACAAAACGGGAATTGTCAGTGGCTTCGGGGTGTACAGCGATGCAAATCCTATAGTCTCAAACGTTCTTCGCTACACCTTTGTTGCCGTCATGAGCGGAAATATTTGCACACTTTCCTATGGGACAAATTTCTTTAACACCGACAGACAGCTTTGCATCGACACAAAAGGCGGCACGTCGTCGTGTAGCGGCGACTCTGGTGGATCGCTGGGCATTTTCGAAAACAATTCGCTCACCATAGCAGGAGTCGTGAGCTATGGCAGTGATAAAGGCTGCGAAATGGGCAGTCCGGAAGTATACACGCGAGTCAGCGCATACCTCGCATGGATTCAGAATAAGACGCATATTGCACTT
Protein: 255 (aa)
MQSSNSDGGMRKRRITNGYIADTGSHFLPFYTLIYVRKITNVFNMCAGSIISEQFVLSAGHCFENVVEVFILAGFKSSQIESYTFFDQIPSSNVIMHPNYNTTTIANDIALVKLSRNLTFSLVIQKIKLPSATSTFLNKTGIVSGFGVYSDANPIVSNVLRYTFVAVMSGNICTLSYGTNFFNTDRQLCIDTKGGTSSCSGDSGGSLGIFENNSLTIAGVVSYGSDKGCEMGSPEVYTRVSAYLAWIQNKTHIAL
| Type | Start | End | Length |
| CDS |
7491 |
8077 |
587 |
| CDS |
8141 |
8318 |
178 |
| intron |
8078 |
8140 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002061773 |
GK17012 [Drosophila willistoni] gb|EDW72759.1| GK17012 [Drosophila willistoni] |
2e-37 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF09409.5 |
PUB domain |
0.087 |
| Pfam |
PF00456.16 |
Transketolase, thiamine diphosphate binding domain |
0.046 |
| Pfam |
PF00089.21 |
Trypsin |
7.4e-42 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.11507 |