MidgeBase gene description page [Pn.12843]
Outline
| Gene ID | Pn.12843 |
| Type | Protein coding gene |
| Scaffold | PnScaf17802 |
| Start | 3052 |
| End | 3837 |
| Direction | - |
Sequence
Transcript: 783 (bp)
ATGAATGTTAAATCGTGTCTTGTGTTGTTGGTTTTGCTCGCTTCGAGCGCGAATTCGCAGAACGAAATCGAGGACGAGCCGCAAGGTTCCTCGCGCATCGTAGGAGGCCAGGTGCTCCAGATTGAGAGCGTCCCCTACATGGTGTCGATTTTCTACAAGAACAGACACCTCTGCGGCGGATCCATCATTTCCGAGCGGTACGTGATCTCGGCCGCGCACTGCGTTATCGACCGTGAAGCACCCAACTATCGCGTACGAAGCGGATCGTCGAGAAAGTCGCGGGGCGGAAGGATAACGGACGTCGGGGAAGTCATTCCTCATCCCGACTTCAGCCCGCAAACCCTCAACAACGACTTCATGATCCTGAAGCTGGCGGCGCCTCTGGACTTGACGGGCGACAAACAGCAGGCGATCGGGCTGCCCAGCGACGACTCAAATAACGAGTACTATGCCGACGATGAGGTGCTCGCGTCGGGCTTTGGCCTCACACAAAACGAACTGGAATCGACCGAGTTCTTGCGCGGCGTCGTCGTTAAGCTGATCGACAGAGCCAAGTGCATCAAGGCATATCCCGACTTCATCACCGACAACATGATTTGCGCTGGCTCGCAGAACAACCAGGACTCGTGCCAAGGCGACAGCGGCGGACCTTTGGAGTCGCTCAAGACGGGAAAACTCGTCGGCATCACCAGCTTCGGAATGTCGTGCGCTGACAAGGAATTTCCGGGTGTTTATTCGAACGTCAAGAAGGCCCGAGATTGGATCAGGAATGTCACCAGCATT
Protein: 261 (aa)
MNVKSCLVLLVLLASSANSQNEIEDEPQGSSRIVGGQVLQIESVPYMVSIFYKNRHLCGGSIISERYVISAAHCVIDREAPNYRVRSGSSRKSRGGRITDVGEVIPHPDFSPQTLNNDFMILKLAAPLDLTGDKQQAIGLPSDDSNNEYYADDEVLASGFGLTQNELESTEFLRGVVVKLIDRAKCIKAYPDFITDNMICAGSQNNQDSCQGDSGGPLESLKTGKLVGITSFGMSCADKEFPGVYSNVKKARDWIRNVTSI
| Type | Start | End | Length |
| CDS |
3055 |
3837 |
783 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAV84270 |
serine protease [Culicoides sonorensis] |
5e-50 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.0033 |
| Pfam |
PF00089.21 |
Trypsin |
1.2e-57 |
| Pfam |
PF01588.15 |
Putative tRNA binding domain |
0.057 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ005273 |
| C. quinquefasciatus |
CPIJ005271 |
| C. quinquefasciatus |
CPIJ005272 |
| C. quinquefasciatus |
CPIJ019428 |
| D. plexippus |
DPOGS204782PA |
| B. mori |
BGIBMGA013720-TA |
| A. aegypti |
AAEL007818 |
| C. quinquefasciatus |
CPIJ010302 |
| H. melpomene |
HMEL017696-PA |