MidgeBase gene description page [Pn.12841]
Outline
| Gene ID | Pn.12841 |
| Type | Protein coding gene |
| Scaffold | PnScaf17801 |
| Start | 4064 |
| End | 8311 |
| Direction | - |
Sequence
Transcript: 1932 (bp)
ATGGACGACTTTTTTTCAAAGTACGGAATGCAAAATCAAGCAAACTTTCGAGGTGGTTTCCAACAACAAAACCGCCCGTACCCGAAACTCGATGCACTCTCAAGTCCGAGCACCATCTTGAAACCCGTCAATTACGACAATGTTCCAGCATTTCGCAAGAACTTTTACACTCCAGCCGAGTCGGTTGTATCTCGTACTCCCCAAGAGTCGGCAGCTCTGCTCGCAAAATACGAAATCACGATGAAGGGAAGAGATGCGGAAATTTACAAGCCACTCGCTCTCTTCAACGAAGCGAACTTTCCCGATTTCATCACGAATGAAATCATTCGTCAAGGTTTCGTCGAGCCGACTTCGATTCAAGCAGTCGCTCTGCCTACGGTTATGAGCGGTAGAAATCTGGTCGGAATCGCGAAAACCGGCAGCGGCAAGACACTCGCGTATCTCCTTCCGGCACTTATTCACCTCAAAAATCAGCCGCAAGTCAAGCCCGGCGATGGCCCGGTCATCTTGGTCTTGGCCCCGACCAGAGAGCTTGCTCAGCAAATTCAGAGCGTTGCCAATGATTTCGGCATTCGCAACAACATCACCAATTGCTGCGTCTTCGGAGGAGCTGCGAAGAGCAATCAAATTCGCGAGCTCGCTCGCGGATGCTCAATTTGCATTGCGACTCCCGGTCGTCTCATCGATTTTCTCGAGCGCGGTGTAATCAACCTCAAGCGCTGCACATACTTGGTCGTCGATGAAGCGGACAGAATGCTTGACATGGGTTTCGAGCCTCAAATCAAGAAGATCATCTCGCAAATTCGCAGCGACCGACAAGTTCTGATGTTTTCGGCGACGTGGCCGAAAGAGGTCAAGAATCTGGCCGAGGAGTACTTGCAGGACTACATCCAAATTAACATCGGTTCATTGAATCTCTCGGCTAATCACAACATTCTACAAGTTATTGACGTTTGCGATGAGAACGAAAAGGACGGAAAGTTGATTAAGATTCTCAATGACATTTCTGGCGAGAATGATCGCAAGACGATTATTTTTGTCGAGACTAAGCGACGTGCTGACGAAATTACGCGATCAATTAATCGCCGCGGTTACAATGCCGTCGCAATCCACGGTGACAAGAGCCAAAACGAGCGTGACTACACACTCAACTCCTTCCGTTCTGGCCGTCACAATGTTTCGATTCTCGTTGCAACAGACGTCGCTTCTCGCGGATTAGACATCGATGATGTGAAGTACGTGATCAACTACGACTATCCGAATAGTTCTGATGAGTATATTCACAGAATCGGACGTACTGGCCGTTGCAGCAATAGCGGAACGGCTTATACATTCTTCACTGATTCGAATTCGCCAAAGGCAAATGACTTGATTAACGTCTTGCGTGAAGCAAACCAAATTATAAATCCGCGTCTCATTGAGATGAGCCGACGCCCGTTTGGCAAGAGAGGAGGAGGAGGCAATATGCGTAGAAATGGCATGGGAATGGGCATGGGAGTGAACATGAACAATAGAAGGCCACGACCTGATAACAGATTTGACGACGCTCAGAAAAAGCCTCGTTGGGAAAACGGTGGAAGTGATGCAAAATACGGCTCGCATCAAGCGCCTCGTTTCCCGGCGAATAACGATGCTAGCTCGGGCTATAAGGGATATCAAGGGAATAACGCTAACAATGGCAACACATCGTACCGCGCAAATACTGGCGGCTATCAACCTCAAAAATTCTACAAGCCGAATTCGTATGAGAAGCCACAGCAGCAACAACAAACCGTTCAACAACATTCCTCCATGCAACAATCTACATTCACCCCGCAAACAAACTTCACAAGCTATCCACCTCCCATGTCGTACGCTCAGTATGCATTCACTGCATACCCGCCGCCATCCGCAGGTTCTGCTCTCTTGCAACAGCCTCCATTACCAAAGAAC
Protein: 644 (aa)
MDDFFSKYGMQNQANFRGGFQQQNRPYPKLDALSSPSTILKPVNYDNVPAFRKNFYTPAESVVSRTPQESAALLAKYEITMKGRDAEIYKPLALFNEANFPDFITNEIIRQGFVEPTSIQAVALPTVMSGRNLVGIAKTGSGKTLAYLLPALIHLKNQPQVKPGDGPVILVLAPTRELAQQIQSVANDFGIRNNITNCCVFGGAAKSNQIRELARGCSICIATPGRLIDFLERGVINLKRCTYLVVDEADRMLDMGFEPQIKKIISQIRSDRQVLMFSATWPKEVKNLAEEYLQDYIQINIGSLNLSANHNILQVIDVCDENEKDGKLIKILNDISGENDRKTIIFVETKRRADEITRSINRRGYNAVAIHGDKSQNERDYTLNSFRSGRHNVSILVATDVASRGLDIDDVKYVINYDYPNSSDEYIHRIGRTGRCSNSGTAYTFFTDSNSPKANDLINVLREANQIINPRLIEMSRRPFGKRGGGGNMRRNGMGMGMGVNMNNRRPRPDNRFDDAQKKPRWENGGSDAKYGSHQAPRFPANNDASSGYKGYQGNNANNGNTSYRANTGGYQPQKFYKPNSYEKPQQQQQTVQQHSSMQQSTFTPQTNFTSYPPPMSYAQYAFTAYPPPSAGSALLQQPPLPKN
| Type | Start | End | Length |
| CDS |
4067 |
4551 |
485 |
| CDS |
4628 |
4801 |
174 |
| CDS |
4886 |
4939 |
54 |
| CDS |
7000 |
8198 |
1199 |
| CDS |
8292 |
8311 |
20 |
| intron |
4552 |
4627 |
76 |
| intron |
4802 |
4885 |
84 |
| intron |
4940 |
6999 |
2060 |
| intron |
8199 |
8291 |
93 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865019 |
DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] |
1e-176 |
| InterPro |
IPR014014 |
RNA helicase, DEAD-box type, Q motif |
|
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR000629 |
RNA helicase, ATP-dependent, DEAD-box, conserved site |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF10398.4 |
Protein of unknown function (DUF2443) |
0.1 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
2.4e-47 |
| Pfam |
PF13401.1 |
AAA domain |
0.1 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
2e-26 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
3.9e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00886 |
| Pn.07709 |
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0003261 |
| M. musculus |
ENSMUSG00000055065 |
| S. invicta |
SI2.2.0_09747 |
| A. gambiae |
AGAP003663 |
| H. sapiens |
ENSP00000371046 |
| H. sapiens |
ENSP00000225792 |
| A. aegypti |
AAEL008738 |
| T. castaneum |
TC002367 |
| C. quinquefasciatus |
CPIJ012512 |
| A. mellifera |
GB11852-PA |
| H. sapiens |
ENSP00000459637 |
| A. gambiae |
AGAP005652 |
| A. mellifera |
GB10726-PA |
| A. gambiae |
AGAP004912 |
| A. gambiae |
AGAP005351 |
| A. mellifera |
GB12312-PA |
| C. quinquefasciatus |
CPIJ014935 |
| H. melpomene |
HMEL013855-PA |
| P. vanderplanki |
Pv.13398 |
| A. aegypti |
AAEL002351 |
| H. sapiens |
ENSP00000380033 |
| A. mellifera |
GB16537-PA |
| A. mellifera |
GB15283-PA |
| B. mori |
BGIBMGA011965-TA |
| S. invicta |
SI2.2.0_01003 |
| C. quinquefasciatus |
CPIJ009445 |
| M. musculus |
ENSMUSG00000020719 |
| H. sapiens |
ENSP00000403085 |
| B. mori |
BGIBMGA011754-TA |
| H. sapiens |
ENSP00000463923 |
| D. melanogaster |
FBgn0029979 |
| H. sapiens |
ENSP00000385536 |
| H. melpomene |
HMEL013900-PA |
| N. vitripennis |
NV16388-PA |
| A. aegypti |
AAEL010787 |
| P. vanderplanki |
Pv.00398 |
| D. plexippus |
DPOGS210327PA |
| D. melanogaster |
FBgn0035720 |
| T. castaneum |
TC010324 |
| C. quinquefasciatus |
CPIJ003935 |
| S. invicta |
SI2.2.0_05205 |
| A. aegypti |
AAEL001769 |
| P. humanus |
PHUM565400-PA |
| P. humanus |
PHUM521070-PA |
| N. vitripennis |
NV17584-PA |
| H. sapiens |
ENSP00000462885 |
| C. quinquefasciatus |
CPIJ016569 |
| D. plexippus |
DPOGS207282PA |
| A. aegypti |
AAEL002083 |
| P. humanus |
PHUM044400-PA |
| P. humanus |
PHUM280650-PA |
| B. mori |
BGIBMGA001336-TA |
| H. melpomene |
HMEL015763-PA |
| N. vitripennis |
NV16386-PA |
| H. melpomene |
HMEL011392-PA |
| A. gambiae |
AGAP012045 |
| P. vanderplanki |
Pv.01958 |
| D. plexippus |
DPOGS204857PA |
| B. mori |
BGIBMGA012013-TA |
| H. sapiens |
ENSP00000460989 |
| N. vitripennis |
NV16387-PA |
| P. humanus |
PHUM565410-PA |
| B. mori |
BGIBMGA011746-TA |
| T. castaneum |
TC002368 |
| D. plexippus |
DPOGS214267PA |