MidgeBase gene description page [Pn.12822]
Outline
| Gene ID | Pn.12822 |
| Type | Protein coding gene |
| Scaffold | PnScaf17769 |
| Start | 1129 |
| End | 2339 |
| Direction | - |
Sequence
Transcript: 1140 (bp)
ATGTCTCAAACCGCTGTCACAAACTACTTGAATGAGCAGAAGCGAACGACCGATAAAGAGCTGGCCGCTGAATGGGGAGTTCTCGAAGAGTTGTACAATGAGAAACTTTACAATGAGTTGACCATCAAACTGGATTCGTTTGTGAAGAATCCAAAGATCCAGAACGAGCAAGTGCTCATGCAGCTCTTCACAAACTTCATTCAGTCGTTTGAGACGAAAATCAACCCGTTTGGCCTCGTTGAAATCCTCTCGGTAGTAATTAGCCACATGAGCGACAAAAAAGAGGCTGTGAGCTTCATTGACAAGCTAAAAGAGAAGGTCAAGATGTGCGACGAGGCATATTGGCTCTGCAAAGTTCTTCAGGGACAGATCTTTTTGGAGTTTCTCAACGATCTCGACTCGACAAAGAAGATCATCGAGGAGCTAAAGGACACTCTCGATGAGGCCGGAAACGTGACACCAGTTCACGGCAAGTACTATTTGCTCGCTTCACAGTACTACCGCTTGATTGGCCACCATGCCGACTACTATCGTGCGTCACTCCAGTTCCTGGGCTGTTCCATTGAGTCCTTCCCGAAAGATCAATGGCCGCAGCAGGCGTTCTTCCTCGGTCTGGCTGCACTGCTCGGCGAAGGAATCTACAATATTGGCGAGTTGCTGTCGCACGAGATTATTGAGTCACTCGTTGGCACGGAATACGAGTGGCTTGTTGACCTGCTGAAGGCATTCAACACTGGTGATATAGGAAAGTTCGAGCAGATGAGGCCAAAGTGGTCACAAATGGGCGACTTGGCAGCACAAGAGACGAAGCTGCGTCAGAAAATTTCCCTGCTCTGCTTGATGGAAATGACTTTCAAGCGACCGGCCAACAACCGTACAATCACATTCGCCGAGATCGCCAGCGAAACCCGACTGCCACTGAAGGAGGTTGAGCTTCTTATCATGAAAGCTCTCGCTCAAGGACTCGTGCGCGGTGCTATTGACCAAGTGTCGGGAGTTGTCAACATGACGTGGGTTCAACCGCGTGTCCTGAATCGCGAACAAGTATCGGGCATGGCAAATACACTCGAGGCGTGGATTCAATCAATCAGCAGCATGGAGCAACTGATTGAGTCGAGAGCATCGGAGATACTAACAAAC
Protein: 380 (aa)
MSQTAVTNYLNEQKRTTDKELAAEWGVLEELYNEKLYNELTIKLDSFVKNPKIQNEQVLMQLFTNFIQSFETKINPFGLVEILSVVISHMSDKKEAVSFIDKLKEKVKMCDEAYWLCKVLQGQIFLEFLNDLDSTKKIIEELKDTLDEAGNVTPVHGKYYLLASQYYRLIGHHADYYRASLQFLGCSIESFPKDQWPQQAFFLGLAALLGEGIYNIGELLSHEIIESLVGTEYEWLVDLLKAFNTGDIGKFEQMRPKWSQMGDLAAQETKLRQKISLLCLMEMTFKRPANNRTITFAEIASETRLPLKEVELLIMKALAQGLVRGAIDQVSGVVNMTWVQPRVLNREQVSGMANTLEAWIQSISSMEQLIESRASEILTN
| Type | Start | End | Length |
| CDS |
1132 |
2167 |
1036 |
| CDS |
2236 |
2339 |
104 |
| intron |
2168 |
2235 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321445 |
AGAP001651-PA [Anopheles gambiae str. PEST] gb|EAA00931.2| AGAP001651-PA [Anopheles gambiae str. PEST] |
1e-177 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR000717 |
Proteasome component (PCI) domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF10537.4 |
ATP-utilising chromatin assembly and remodelling N-terminal |
0.035 |
| Pfam |
PF01399.22 |
PCI domain |
8.6e-14 |
| Pfam |
PF05701.6 |
Plant protein of unknown function (DUF827) |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000333811 |
| H. sapiens |
ENSP00000396937 |
| D. plexippus |
DPOGS204084PA |
| A. aegypti |
AAEL014915 |
| H. melpomene |
HMEL009138-PA |
| N. vitripennis |
NV10063-PA |
| M. musculus |
ENSMUSG00000025487 |
| H. sapiens |
ENSP00000433364 |
| A. gambiae |
AGAP001651 |
| B. mori |
BGIBMGA011237-TA |
| D. melanogaster |
FBgn0028691 |
| P. humanus |
PHUM579950-PA |
| P. vanderplanki |
Pv.05030 |
| C. quinquefasciatus |
CPIJ005347 |
| A. mellifera |
GB16614-PA |
| T. castaneum |
TC015728 |
| S. invicta |
SI2.2.0_08497 |
| H. sapiens |
ENSP00000436186 |