MidgeBase gene description page [Pn.12817]
Outline
| Gene ID | Pn.12817 |
| Type | Protein coding gene |
| Scaffold | PnScaf17767 |
| Start | 24671 |
| End | 34228 |
| Direction | + |
Sequence
Transcript: 1173 (bp)
ATGGTTACAAGCAAGTGGTCGCTGTTTGCTGACAGATTCGAAGTCAGAAAGCCAGCAGCAGACATGACAAAGTTGGACGCGATTCTCGACTTCTTTGCCTTCATCTCCATCTCAATCGGCTACATTGTGCAGTCAATATTCTACACAATCTTCGGATGGCCGGAAAAAGATCTCAACGGAGAGCTGTGCGTGATCACAGGAGGAGGCGGAGGACTGGGAAGATTGCTAGCGATGCGCTTAGTTAGATTAGGTGTTAAGGTTATTTTATGGGACATTAGTCGAGAAGCGCTAGATGAGTCTAAAAAAATTATCGATTCAATGGGTGGCTGGTGTCGCGCACAGATAGTCGACATCTCGAAGCGAGAAGAGGTGTACAAGGCAGCAGAAGACATCAAGAATCAATATGGCAATCTCAAGGCTGCGGTGAACGTGCAGGATGCGCCCGAAGCCTTTGCGGTGACGTTGCTCATAAACAACGCCGGCGTTCTAAGTGGGCGAGCACTTTTGGACACTCCCGATCACCTGATAGAGCGGTCGTTTAACGTGAACGTCATAGCGCACTTCTGGACGGTCAAAGCCTTCCTCCCGACGATGATCGAGAAGGATCACGGCCACATTGTGACGATCGCATCGATGGCGGGTCACGTGGGCATTGCGAAGCTCATCGACTACTGCAGCAGCAAGTACGCGGCGGTGGGCTTCGACGAGGCTCTCCGGCTCGAACTCGAAGTGATGGGAATCAAAAATGTTCACACATCTGTAATCTGTCCGTACTTCATACAAGCCACTGGAATGTTTGACGATGTTAATTCAAGATGGGTAAACACTCTGAGCTCGAATGACGTAGCCGATCGAATTGTAGAAGCTATTAGGAAGAACGAGAAGATGGCCCTCATTCCGTGGTACTTTAACATCATGCTCGTGTTCAAGACGATCTTCCCGTGGGGCTGCACGTCGGGCTTCCTCCGAAGACTCGTTCCCGATGCGACGCCACAGCACACGCTAGCGACGCCCGTTTCGACGCCGACCATCACCAAACAGGAGCAAATGCACTTCAACAACAACAACAACCACCATCACGTGATGAACAACAACAACAACAATGATGATATTAATAAGGAAACGACACTGATAAAGCGAATGGCTGCCACAGTTGACGGCGAGAGAGTGTTG
Protein: 391 (aa)
MVTSKWSLFADRFEVRKPAADMTKLDAILDFFAFISISIGYIVQSIFYTIFGWPEKDLNGELCVITGGGGGLGRLLAMRLVRLGVKVILWDISREALDESKKIIDSMGGWCRAQIVDISKREEVYKAAEDIKNQYGNLKAAVNVQDAPEAFAVTLLINNAGVLSGRALLDTPDHLIERSFNVNVIAHFWTVKAFLPTMIEKDHGHIVTIASMAGHVGIAKLIDYCSSKYAAVGFDEALRLELEVMGIKNVHTSVICPYFIQATGMFDDVNSRWVNTLSSNDVADRIVEAIRKNEKMALIPWYFNIMLVFKTIFPWGCTSGFLRRLVPDATPQHTLATPVSTPTITKQEQMHFNNNNNHHHVMNNNNNNDDINKETTLIKRMAATVDGERVL
| Type | Start | End | Length |
| CDS |
24671 |
24802 |
132 |
| CDS |
29861 |
30014 |
154 |
| CDS |
31429 |
31553 |
125 |
| CDS |
33200 |
33244 |
45 |
| CDS |
33305 |
33347 |
43 |
| CDS |
33407 |
33722 |
316 |
| CDS |
33868 |
34225 |
358 |
| intron |
24803 |
29860 |
5058 |
| intron |
30015 |
31428 |
1414 |
| intron |
31554 |
33199 |
1646 |
| intron |
33245 |
33304 |
60 |
| intron |
33348 |
33406 |
59 |
| intron |
33723 |
33867 |
145 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002003307 |
GI17845 [Drosophila mojavensis] gb|EDW12749.1| GI17845 [Drosophila mojavensis] |
1e-113 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.0071 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.00081 |
| Pfam |
PF08242.7 |
Methyltransferase domain |
0.0024 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
3.8e-25 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.057 |
| Pfam |
PF02737.13 |
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
0.0038 |
| Pfam |
PF01210.18 |
NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus |
0.4 |
| Pfam |
PF08659.5 |
KR domain |
2.2e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL010290 |
| D. plexippus |
DPOGS200443PA |
| D. melanogaster |
FBgn0032910 |
| P. vanderplanki |
Pv.07897 |
| A. gambiae |
AGAP010232 |
| T. castaneum |
TC006353 |
| A. mellifera |
GB17598-PA |
| B. mori |
BGIBMGA008902-TA |
| P. humanus |
PHUM376670-PA |
| N. vitripennis |
NV12324-PA |
| C. quinquefasciatus |
CPIJ003837 |
| A. mellifera |
GB13292-PA |