MidgeBase gene description page [Pn.12797]
Outline
| Gene ID | Pn.12797 |
| Type | Protein coding gene |
| Scaffold | PnScaf17723 |
| Start | 129 |
| End | 4375 |
| Direction | - |
Sequence
Transcript: 1932 (bp)
ATGCCACGCAAGAGACCGTCGCACGCGCGCCGCTTCATCCGCTACTCCTTCGTCCGTTTCATCGTCGCCGTCGCCTTTTTCGCGTCGATCTTCATGCTGTGGATGTCGACGTGGAACGAGGAGCTGTCCGAGGTGGTGGGGCAGCAGCAGATCGTGGACGTCGACCTCAAGCAGATAATTCGCGGTCGAATTGTCGACATCGTGGCGAAGGAGAAGCAGGCCGTCGAGGATTTTGAGGATTTCGGGGAGAAAATCGAGGGGGCCGTGCTGGAGGACGAGGAGCCGACTGCGAGCGAGGAGGAGGTCGAGCTGATTGGACTTCACAAGATCCCGCGGCCGAAGGTCAGCGAAGACACGCGCGAGCTGTGGCGACGCCTAAACCTGACCAATCCGGGTGAGACTTTCGAAAAAAATCAGGTTTTTTTCTCAAAAAATAACGGTCGCCCTAAAATTTGCCACCGTGCAGGTCACATGGGCGAGCGCATCGTGCTGCCGAATGTCCTTCCGCCCGACATCCAGCGCATGTTCAACGCCAGCTGGGAAAAGTACAAGATCAACGAGTTCGCGGCCAAACTCATCCCGCTTGACCGCGACCTGCCCGACATGCGCACCGACTACTGCCGCAATCTCAGCTACAGCGACCGGCAACTGCCCACCGCCTCGACCATCCTCGTCTTCCACAACGAGGCGCTCTCGATGATCCTGCGGACGGTTGTTTCGATTCTGCGGTTCTCGCCGCCTCATCTGCTCAAGGACATCGTGCTGGTCGACGACTGCAGCACTCACGAAAATCTTCATGAAGAGCTCGAAAGAGAAGCTCTGAAGCTGCCCAAGGTGAAGATTGTGCGCTCGCCGATGCGCATTGGCCTCATGAAGGCACGCATGCTGGGAGCCGTAAATGCTCAGGGACCGGCTCTTGTCTTTATGGACGCACACATGGAAGTGACGGTCGGTTGGCTGGAGCCGCTGCTCGATCGCCTCGCCTTCAACCGCAACATAACGGCCATCAGCTCGGTGGAGACGATCAACTACCAGACACTTGGCGTGAGCTACCACCGCGACCCGAAGTACATTCCCGTCACGGGCTTCGACTGGAATCTGATTTTCAACTGGAAGCAGCCGCCCGAGTCAGAGCACAAGCGACGAGCGAATCCAAACGAGCCGATTGTGTCGCCAACCATGCTCGGCGCCTTCTTTGTCATCGACAAAAACTACTTCAAGGAGCTCGGCATGTACGACCCGGAGTTTGAGATTTGGGGCGCTGAGAACCTCGAGTTGGCTTTCAAAGTCTGGATGTGCCATGGACGAGTAGAGGTCATACCGTGCAGTCGAGTTGCTCATCTTTTTAGGCGGAAATTCCCTTACGACTGGCCAAATCCAAAGGGTGGAAACATTTTGCTGCGGAACACCGACCGACTGGCCGAGGTCTGGCTAGATGAATACAAGCGGTTCTATTACAGACGCGTGGGCAACAGAAAACGTGACTACGGTGACGTCACGGAGCAGAAGAAGCTGCGCGAGCGTCTCAGCTGCAAGAGCTTCAAGTGGTACCTCGAAAACGTCTACCCCGACCACGTGATACCGGCTGACATTCAGGACAAAACCACGACAATTTCGACTTCACTGCCAGCCGAAGACGATGAAAGTTCGCCGCTGGACGGCAAAGAGAATTTGCCCTCGAAAAATACAATCAACAATGACGTCGCTGAAGCTGCCGGCAAAGCTGACTCATCAGTTGATGGCCGCAAAGTGAAGAAAAATCAAGCAAGTGAAGAAAAGAACACGACAAGAGTCTCGAGCGGATCGAAAGAAGTGGAGGTCGAGGAGCTGTATGACGAGAGCGAAAATCAGCAAGACGAGCCTCCGAAGTTCCTCATGCGAAAGCGAAAGAGGATGAGAAAGTCGCGGCGAACCAAAAATGGAGAAAAAAAA
Protein: 644 (aa)
MPRKRPSHARRFIRYSFVRFIVAVAFFASIFMLWMSTWNEELSEVVGQQQIVDVDLKQIIRGRIVDIVAKEKQAVEDFEDFGEKIEGAVLEDEEPTASEEEVELIGLHKIPRPKVSEDTRELWRRLNLTNPGETFEKNQVFFSKNNGRPKICHRAGHMGERIVLPNVLPPDIQRMFNASWEKYKINEFAAKLIPLDRDLPDMRTDYCRNLSYSDRQLPTASTILVFHNEALSMILRTVVSILRFSPPHLLKDIVLVDDCSTHENLHEELEREALKLPKVKIVRSPMRIGLMKARMLGAVNAQGPALVFMDAHMEVTVGWLEPLLDRLAFNRNITAISSVETINYQTLGVSYHRDPKYIPVTGFDWNLIFNWKQPPESEHKRRANPNEPIVSPTMLGAFFVIDKNYFKELGMYDPEFEIWGAENLELAFKVWMCHGRVEVIPCSRVAHLFRRKFPYDWPNPKGGNILLRNTDRLAEVWLDEYKRFYYRRVGNRKRDYGDVTEQKKLRERLSCKSFKWYLENVYPDHVIPADIQDKTTTISTSLPAEDDESSPLDGKENLPSKNTINNDVAEAAGKADSSVDGRKVKKNQASEEKNTTRVSSGSKEVEVEELYDESENQQDEPPKFLMRKRKRMRKSRRTKNGEKK
| Type | Start | End | Length |
| CDS |
132 |
603 |
472 |
| CDS |
1370 |
1461 |
92 |
| CDS |
2015 |
2090 |
76 |
| CDS |
2156 |
2181 |
26 |
| CDS |
2243 |
2569 |
327 |
| CDS |
3152 |
3303 |
152 |
| CDS |
3589 |
4375 |
787 |
| intron |
604 |
1369 |
766 |
| intron |
1462 |
2014 |
553 |
| intron |
2091 |
2155 |
65 |
| intron |
2182 |
2242 |
61 |
| intron |
2570 |
3151 |
582 |
| intron |
3304 |
3588 |
285 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_970398 |
PREDICTED: similar to n-acetylgalactosaminyltransferase [Tribolium castaneum] |
1e-110 |
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF13641.1 |
Glycosyltransferase like family 2 |
2.4e-06 |
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
1.8e-05 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
8.2e-22 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
0.0015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06429 |