MidgeBase gene description page [Pn.12785]
Outline
| Gene ID | Pn.12785 |
| Type | Protein coding gene |
| Scaffold | PnScaf17649 |
| Start | 285 |
| End | 2650 |
| Direction | + |
Sequence
Transcript: 1395 (bp)
ATGGCGATCTGCATCATCGATATTTATATGGGGATGTACTACAACACGATTATCGGATGGGCCGTTTACTACTTTTTCGCATCATTTGACACACAGCTACCATGGGAAAAGTGCGGAAACTCTTGGAACACTGACTCCTGTCTCTCGGTCGACATTCCCACGAACCTCACCAACACCACATCACCAGCGCGAGAGTACTTTGAACGAAACGTGCTCGAACAGTACAAATCGAACGGCCTCGAATACATGGGACCAGTGAAACCGTCTCTGGCGCTCTGCGTGTTTGGTGTTTTCGTCCTCGTTTACTTTTCGCTGTGGAAGGGCGTAAAGAGCACGGGAAAGGCTGTTTGGATCACTGCTCTTGCGCCGTATTTCGTGCTCTTCGTCCTACTTATTCGTGGCGTGACTTTGGACGGTGCAGATGAAGGTATTCGCTACTATCTGACCCCTGAGTGGGAAAAGCTAAAAAACACCAAGGTGTGGATTGACGCTGCTAGCCAAATCTTTTTCTCGCTTGGACCCGGCTTCGGAACTTTGCTGGCACTGTCGAGCTATAACAAGTTCAACAATAACTGCTACCGCGACGCGCTGCTCACGAGCTCCATTAACTGCCTCACAAGCTTTCTGGCTGGCTTCGTAATTTTCTCCGTTCTTGGTTACATGGCGAAGATTCAAAACGTCGACATCGACAAGGTGGGCCTCGAGGGGCCAGGTTTAGTCTTCATTGTTTATCCAGAAGCGATAAGCTTAATGGGCGGGTCCACTTTCTTCTCAATAATTTTCTTCCTCATGTTAATTACGCTCGGACTCGACTCAACCTTTGGTGGCCTCGAGGCAATGATCACAGCGCTCTGCGACGAGTTTCCCAACTTCATTGGCAAGCGTCGAAAGCTCTTCGTCCTGGTTCTCCTTGCATTTATCTACATTTGTGCACTGCCAACGATGACATACGGCGGCGTATATTTGGTCAACTTTCTGAATGTCTATGGCCCAGGTCTTGCAATTCTGTTCGTGGTTTTTGTTGAGTCCGCTGGCGTCTTCTGGTTCTATGGCGTTGATAAATTTTCGGCTGACATCGAACAAATGTTGGGCCAAAAGCCGTCACTATACTGGCGCGTCTGCTGGCGTTATGTTTCACCAACATTTCTTTTCGTAATTCTAATATTTTCAATACTCAATAACGAGCACATGCTAGGCGAAGAATATCACTATCCTGAATGGGCCATTCCTTTAGGATGGGTTCTGACGCTTTCTTCTGTGATCTGTATTCCGTTTTATATGATTTACAAATTCGATAGGAGTCGAGGAAGTTTCAAAAGAAAACTGAGAACGATGTTCAAACCAGAGCCTTTAGTACCGATGACTGGTCAAATAAGTACGATGATCAGCACTGTT
Protein: 465 (aa)
MAICIIDIYMGMYYNTIIGWAVYYFFASFDTQLPWEKCGNSWNTDSCLSVDIPTNLTNTTSPAREYFERNVLEQYKSNGLEYMGPVKPSLALCVFGVFVLVYFSLWKGVKSTGKAVWITALAPYFVLFVLLIRGVTLDGADEGIRYYLTPEWEKLKNTKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALLTSSINCLTSFLAGFVIFSVLGYMAKIQNVDIDKVGLEGPGLVFIVYPEAISLMGGSTFFSIIFFLMLITLGLDSTFGGLEAMITALCDEFPNFIGKRRKLFVLVLLAFIYICALPTMTYGGVYLVNFLNVYGPGLAILFVVFVESAGVFWFYGVDKFSADIEQMLGQKPSLYWRVCWRYVSPTFLFVILIFSILNNEHMLGEEYHYPEWAIPLGWVLTLSSVICIPFYMIYKFDRSRGSFKRKLRTMFKPEPLVPMTGQISTMISTV
| Type | Start | End | Length |
| CDS |
285 |
320 |
36 |
| CDS |
392 |
558 |
167 |
| CDS |
675 |
1422 |
748 |
| CDS |
1951 |
1993 |
43 |
| CDS |
2061 |
2218 |
158 |
| CDS |
2281 |
2448 |
168 |
| CDS |
2573 |
2647 |
75 |
| intron |
321 |
391 |
71 |
| intron |
559 |
674 |
116 |
| intron |
1423 |
1950 |
528 |
| intron |
1994 |
2060 |
67 |
| intron |
2219 |
2280 |
62 |
| intron |
2449 |
2572 |
124 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651092 |
norepinephrine/norepinephrine transporter [Aedes aegypti] gb|EAT42921.1| norepinephrine/norepinephrine transporter [Aedes aegypti] |
0.0 |
| InterPro |
IPR000175 |
Sodium:neurotransmitter symporter |
|
| Gene Ontology(BP) |
GO:0006836 |
neurotransmitter transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005328 |
neurotransmitter:sodium symporter activity |
|
| Pfam |
PF00209.13 |
Sodium:neurotransmitter symporter family |
2.8e-163 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10766 |
| Pn.12519 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000398063 |
| A. aegypti |
AAEL000298 |
| C. quinquefasciatus |
CPIJ014421 |
| D. plexippus |
DPOGS201184PA |
| H. sapiens |
ENSP00000457473 |
| H. melpomene |
HMEL018043-PA |
| H. melpomene |
HMEL017132-PA |
| M. musculus |
ENSMUSG00000030108 |
| H. sapiens |
ENSP00000354107 |
| P. humanus |
PHUM099770-PA |
| N. vitripennis |
NV14338-PA |
| P. humanus |
PHUM545460-PA |
| H. sapiens |
ENSP00000429101 |
| S. invicta |
SI2.2.0_11615 |
| S. invicta |
SI2.2.0_07172 |
| A. mellifera |
GB16752-PA |
| H. sapiens |
ENSP00000454439 |
| T. castaneum |
TC005219 |
| M. musculus |
ENSMUSG00000055368 |
| S. invicta |
SI2.2.0_10387 |
| H. sapiens |
ENSP00000287766 |
| P. vanderplanki |
Pv.02313 |
| H. sapiens |
ENSP00000385822 |
| H. sapiens |
ENSP00000434460 |
| H. sapiens |
ENSP00000339260 |
| H. sapiens |
ENSP00000380464 |
| A. mellifera |
GB11338-PA |
| A. mellifera |
GB19183-PA |
| P. humanus |
PHUM228010-PA |
| D. melanogaster |
FBgn0039915 |
| T. castaneum |
TC008855 |
| P. humanus |
PHUM032740-PA |
| H. sapiens |
ENSP00000352702 |
| B. mori |
BGIBMGA006619-TA |
| M. musculus |
ENSMUSG00000030310 |
| A. aegypti |
AAEL005581 |
| B. mori |
BGIBMGA004570-TA |
| D. melanogaster |
FBgn0034136 |
| M. musculus |
ENSMUSG00000030307 |
| H. sapiens |
ENSP00000254488 |
| T. castaneum |
TC015882 |
| D. plexippus |
DPOGS213653PA |
| H. sapiens |
ENSP00000353791 |
| H. sapiens |
ENSP00000456377 |
| M. musculus |
ENSMUSG00000052026 |
| H. sapiens |
ENSP00000378298 |
| H. sapiens |
ENSP00000445171 |
| P. humanus |
PHUM035690-PA |
| P. vanderplanki |
Pv.11835 |
| B. mori |
BGIBMGA000927-TA |
| H. sapiens |
ENSP00000388755 |
| H. sapiens |
ENSP00000369237 |
| C. quinquefasciatus |
CPIJ007997 |
| H. sapiens |
ENSP00000270349 |
| P. humanus |
PHUM097380-PA |
| N. vitripennis |
NV14552-PA |
| H. sapiens |
ENSP00000442523 |
| H. sapiens |
ENSP00000399806 |
| A. gambiae |
AGAP010481 |
| D. plexippus |
DPOGS212172PA |
| H. sapiens |
ENSP00000416199 |
| A. mellifera |
GB19372-PA |
| H. sapiens |
ENSP00000407104 |
| H. sapiens |
ENSP00000350362 |
| H. sapiens |
ENSP00000361380 |
| M. musculus |
ENSMUSG00000030096 |
| D. plexippus |
DPOGS204532PA |
| A. mellifera |
GB15426-PA |
| M. musculus |
ENSMUSG00000028542 |
| H. sapiens |
ENSP00000253122 |
| D. plexippus |
DPOGS215970PA |
| H. sapiens |
ENSP00000428200 |
| A. mellifera |
GB14492-PA |
| A. gambiae |
AGAP007367 |
| H. sapiens |
ENSP00000361381 |
| H. sapiens |
ENSP00000261707 |
| M. musculus |
ENSMUSG00000020838 |
| D. melanogaster |
FBgn0034911 |
| N. vitripennis |
NV13702-PA |
| H. sapiens |
ENSP00000361384 |
| A. aegypti |
AAEL010106 |
| H. sapiens |
ENSP00000456210 |
| H. sapiens |
ENSP00000388184 |
| A. aegypti |
AAEL010681 |
| H. melpomene |
HMEL005257-PA |
| H. sapiens |
ENSP00000399136 |
| H. sapiens |
ENSP00000360967 |
| H. sapiens |
ENSP00000394956 |
| P. humanus |
PHUM216350-PA |
| H. melpomene |
HMEL008743-PA |
| A. gambiae |
AGAP010621 |
| M. musculus |
ENSMUSG00000021609 |
| H. sapiens |
ENSP00000403041 |
| H. sapiens |
ENSP00000219833 |
| H. sapiens |
ENSP00000230671 |
| C. quinquefasciatus |
CPIJ015063 |
| S. invicta |
SI2.2.0_02480 |
| H. sapiens |
ENSP00000434364 |
| D. melanogaster |
FBgn0010414 |
| B. mori |
BGIBMGA014231-TA |
| M. musculus |
ENSMUSG00000039728 |
| T. castaneum |
TC002347 |
| D. plexippus |
DPOGS207520PA |
| H. sapiens |
ENSP00000444268 |
| H. melpomene |
HMEL012561-PA |
| H. sapiens |
ENSP00000457375 |
| P. vanderplanki |
Pv.03706 |
| C. quinquefasciatus |
CPIJ010746 |
| M. musculus |
ENSMUSG00000031089 |
| T. castaneum |
TC013646 |
| A. gambiae |
AGAP009768 |