MidgeBase gene description page [Pn.12782]
Outline
| Gene ID | Pn.12782 |
| Type | Protein coding gene |
| Scaffold | PnScaf17618 |
| Start | 20209 |
| End | 31625 |
| Direction | - |
Sequence
Transcript: 1407 (bp)
ATGTACCATGAGGACGAAGAACCTCGCTGTGTTCAACTGACAAGTCAGCACAAGGGAGCAATTCGATTTATTCGAAAGATGAAGTATTTTGTTGCTCGTCGTAAGTTTAAGGAAGCGCTAAAGCCGTACGATGTAAAGGATGTGATTGAGCAGTATTCCGCCGGCCATGTTGATCTGCTTGGTCGAGTCAAAAATGTTCAGACTAGCAAAAAGAAGAAAGAAAACAGTGCTCGTGGACAATTCCAACGTGCAGTTTTAATCTCGATGCATAAACTCAAATATTTTGTTGCTCGTAAGAAATTTCGAGAGGCACTTAAACCCTACGATGTTAAGGACGTGATAGAACAGTACTCGACGGGCCACGCTGACCTTCTTAATAGAGTTAGGAATTTACAGTTTAGACTAGATCAAATCCTGGGGAAGCAAGGATCCAAAGCGAAGGACGTGTATGCATCGAAAATAAGCTTGGCGTCTCGCGTTGTAAAAATTGAAAGACAAGTCGACGATGTAGAAACTAAATTAGATAATTTGATTGAGCTGTACATGCAAGACAGGAAGCGTTTGCTTTCACTTCCGTTATGTCCCGATTCATCACATTCCAATAATCTTCCACCACAATTGCCACCACCAAGCGGTGACTCTTCAATTGTTACTAGTAATAATGCAGCAGTAAATAGTAGTGCTAATGGTGCTAGCGGTAGTGGATCAGTCAAGGTAAAAATGCCCAAGCCAATTCTAGTGGATAAACAAACGAGCGAACCTAATTCTCCAATAGCCAAAACTTTTGATGAGCATTCACAGAAGCATCAAATTCTGCAGCAGCAGCTACAGCAGAACCAAAAACGGCCACCAATGTACCGTGGCTATTCGGATTTGGGAAATCGAATGAAGAAGAGAGTTACATTGAGCAGCTCAATTCCTACGCAGTACACAAGTGATTGTAGCGGCGAAGTTGTGATAGTTGTTCCCTCGCTGGACAACCTTCCCGAAAATATTCGATCCGATAATCATTCGCATCATATCTGCATCGAGGCAGAGGGCGAGGCTGAGCCCAACAGTCCCAAGACCATCACCGAAAGTTCGATGACACTTTTGGACGAGGAGGACGGCGAAGATGACTTGGATGAGGAGGAGGAGGATCTCGATATTGGAACGGAAATTGATCCCGACTCACCTCCTTGGGATTTCCTGCACACCGAAATTGAGGAAAATGACGATTCCAACGAGGACACTGCTCTCCTTCGTTCCAGAGCAGCACGAACGGAAATTGTCATAACTCCGATCAGTCCTGTAAGCTCATCGAATGACATCGCTCGCATGGGACACGAGGCGAACAGGAAAAACGGAAACCGAGGAATGGATTTACTTAAGCCCGACATGCAGCAACCGAGAATCTCGGAGGACATT
Protein: 469 (aa)
MYHEDEEPRCVQLTSQHKGAIRFIRKMKYFVARRKFKEALKPYDVKDVIEQYSAGHVDLLGRVKNVQTSKKKKENSARGQFQRAVLISMHKLKYFVARKKFREALKPYDVKDVIEQYSTGHADLLNRVRNLQFRLDQILGKQGSKAKDVYASKISLASRVVKIERQVDDVETKLDNLIELYMQDRKRLLSLPLCPDSSHSNNLPPQLPPPSGDSSIVTSNNAAVNSSANGASGSGSVKVKMPKPILVDKQTSEPNSPIAKTFDEHSQKHQILQQQLQQNQKRPPMYRGYSDLGNRMKKRVTLSSSIPTQYTSDCSGEVVIVVPSLDNLPENIRSDNHSHHICIEAEGEAEPNSPKTITESSMTLLDEEDGEDDLDEEEEDLDIGTEIDPDSPPWDFLHTEIEENDDSNEDTALLRSRAARTEIVITPISPVSSSNDIARMGHEANRKNGNRGMDLLKPDMQQPRISEDI
| Type | Start | End | Length |
| CDS |
20212 |
20328 |
117 |
| CDS |
20414 |
20619 |
206 |
| CDS |
23835 |
24010 |
176 |
| CDS |
24088 |
24272 |
185 |
| CDS |
24723 |
24947 |
225 |
| CDS |
25193 |
25289 |
97 |
| CDS |
26493 |
26545 |
53 |
| CDS |
26750 |
26824 |
75 |
| CDS |
27064 |
27130 |
67 |
| CDS |
28397 |
28449 |
53 |
| CDS |
28659 |
28733 |
75 |
| CDS |
29256 |
29326 |
71 |
| CDS |
31619 |
31625 |
7 |
| intron |
20329 |
20413 |
85 |
| intron |
20620 |
23834 |
3215 |
| intron |
24011 |
24087 |
77 |
| intron |
24273 |
24722 |
450 |
| intron |
24948 |
25192 |
245 |
| intron |
25290 |
26492 |
1203 |
| intron |
26546 |
26749 |
204 |
| intron |
26825 |
27063 |
239 |
| intron |
27131 |
28396 |
1266 |
| intron |
28450 |
28658 |
209 |
| intron |
28734 |
29255 |
522 |
| intron |
29327 |
31618 |
2292 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688850 |
AGAP006347-PB [Anopheles gambiae str. PEST] gb|EDO63856.1| AGAP006347-PB [Anopheles gambiae str. PEST] |
1e-105 |
| InterPro |
IPR013821 |
Potassium channel, voltage dependent, KCNQ, C-terminal |
|
| Pfam |
PF03520.9 |
KCNQ voltage-gated potassium channel |
2.1e-80 |
| Pfam |
PF09432.5 |
Tho complex subunit THP2 |
0.17 |
| Pfam |
PF10108.4 |
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB |
0.046 |
| Pfam |
PF04763.7 |
Protein of unknown function (DUF562) |
0.046 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ004930 |
| A. aegypti |
AAEL012277 |