MidgeBase gene description page [Pn.12750]
Outline
| Gene ID | Pn.12750 |
| Type | Protein coding gene |
| Scaffold | PnScaf17513 |
| Start | 656 |
| End | 2807 |
| Direction | - |
Sequence
Transcript: 1488 (bp)
ATGTCAAGCAAAAAGAGTTCGGCAGCAGCGAATTTAGTCGTCCAGTTAGAATGCAAGAACCTCCACAGCTACCTTAAGTCACAAACACAAATAATCTCGAAATTGTATGAAGAACCGTCAATTTGCTTGGCCGCTTATCGTGATTTGCCCGAAATTGCGAAGCAGTTTGTGATTAGAATGCTGTGTGTGGAGCAGCCAGTGCCTCAAGCTGTCGTGCAATCATGGGGATCGCAAGTTTATTCAAAAGAAAATTTGGCAGCATGTGAAGCACTCACGGAGCTCCGAATATGGACAGAAGCATCGATAAGTGGCGGGCTGACGGCATGGGACTTGAATCCTTCCTTCAAGCGCAACTTAAAAATAGCTTGGCTTGGCGGAGGTCGATCGTGGTCAATGTTCAACTCGGTGGAGCAGTCGGAAGCAAAGAGCCGCGACATCAGCTTCCTCGACACGTACGCGATGTCGCGCTGGAACTGCCTGCTGCACTACATGGTCGACTCGAACTCGTCGAAGGGCAACGAGATGGAGGGCATTTCGGTCGATGCCGTCCGAATAATCCTGCACGCAAATCTCATGAACCGGAACGAGCAGGACGGTAGCTGTATGCTGACGAGTCAGGGATTTCAGTTTCTGCTGATGGACACGCAGTCGCAAGTGTGGCACTTTATGCTCCAGTATTTGAACACATGCGAGCAGCGCGGATTAAGTCTCGTCGATTGCCTCTCGATGCTCTTCCAGCTGAGCTTCTCGACTCTCGGACGTGACTACAGCTCCGAGGGATTAAGCGAGAACATGCTGACCTTCCTGCAGCATCTGCGCGAATTCGGTCTCGTCTACCAGAGAACGCGAAAGGAGAAACGATTCTTTCCGACCCGTTTGGCTCTGAATTTCACATCGAAGAATGCCATCGCCCCCGAGAGCATCATCGAGAACACGAACGTCAATAGCGCGAGCAGCAAGCTGCAGCAGAGCGATGACAATAATTATGATAAGGGCTACATCATTGTCGAAACAAATTATCGCGTGTACGCGTACACCGATTCGAAGTTGCAGATTTCGCTGCTTGCACTCTTCACCGAATTGCTCTATCGCTTTCCCAACGTGACTGTCGGCGTAATTACGCGCGACTCCATACGACAAGCACTGCGGGGCGGCATCACAGCACGACAAATTATCAGCTATTTGGAGCAACATGCACACCCAAAGATGATTACCAACGCGGCAACATCATCATTCAAAACGACATCGGTTCTGCCGCCAACGGTAATTGATCAAATAAAATTATGGGAAAACGAGCGAAATCGCTTCTCCTTCATTGACGGCGTGGTTTACAATCAATTCTTGTCAGAGGCCGATTTCATGACACTAAGGGACTATGCACAATCGATTGAGGTCCTTCTGTGGCAGAACGAACGCACGAGAACGATGGTTGTGAAAAAGTCCGGGCACGAGGATGTTAAAAAGTTTTGGAAACGATACTCGAAGGGA
Protein: 496 (aa)
MSSKKSSAAANLVVQLECKNLHSYLKSQTQIISKLYEEPSICLAAYRDLPEIAKQFVIRMLCVEQPVPQAVVQSWGSQVYSKENLAACEALTELRIWTEASISGGLTAWDLNPSFKRNLKIAWLGGGRSWSMFNSVEQSEAKSRDISFLDTYAMSRWNCLLHYMVDSNSSKGNEMEGISVDAVRIILHANLMNRNEQDGSCMLTSQGFQFLLMDTQSQVWHFMLQYLNTCEQRGLSLVDCLSMLFQLSFSTLGRDYSSEGLSENMLTFLQHLREFGLVYQRTRKEKRFFPTRLALNFTSKNAIAPESIIENTNVNSASSKLQQSDDNNYDKGYIIVETNYRVYAYTDSKLQISLLALFTELLYRFPNVTVGVITRDSIRQALRGGITARQIISYLEQHAHPKMITNAATSSFKTTSVLPPTVIDQIKLWENERNRFSFIDGVVYNQFLSEADFMTLRDYAQSIEVLLWQNERTRTMVVKKSGHEDVKKFWKRYSKG
| Type | Start | End | Length |
| CDS |
659 |
940 |
282 |
| CDS |
1052 |
1411 |
360 |
| CDS |
1798 |
2266 |
469 |
| CDS |
2361 |
2492 |
132 |
| CDS |
2563 |
2807 |
245 |
| intron |
941 |
1051 |
111 |
| intron |
1412 |
1797 |
386 |
| intron |
2267 |
2360 |
94 |
| intron |
2493 |
2562 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309710 |
AGAP010984-PA [Anopheles gambiae str. PEST] gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR004598 |
Transcription factor Tfb2 |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Pfam |
PF03849.9 |
Transcription factor Tfb2 |
1.1e-131 |
| Pfam |
PF07006.6 |
Protein of unknown function (DUF1310) |
0.054 |
| Pfam |
PF13625.1 |
Helicase conserved C-terminal domain |
1.3e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000403156 |
| P. humanus |
PHUM518520-PA |
| H. sapiens |
ENSP00000365504 |
| H. sapiens |
ENSP00000383300 |
| T. castaneum |
TC015892 |
| H. sapiens |
ENSP00000388227 |
| H. sapiens |
ENSP00000399554 |
| H. sapiens |
ENSP00000401105 |
| A. gambiae |
AGAP010984 |
| H. sapiens |
ENSP00000259895 |
| H. sapiens |
ENSP00000409483 |
| B. mori |
BGIBMGA012623-TA |
| H. sapiens |
ENSP00000365493 |
| P. vanderplanki |
Pv.05985 |
| H. sapiens |
ENSP00000396251 |
| A. gambiae |
AGAP012880 |
| C. quinquefasciatus |
CPIJ005256 |
| D. melanogaster |
FBgn0261109 |
| N. vitripennis |
NV18723-PA |
| H. sapiens |
ENSP00000387980 |
| H. sapiens |
ENSP00000395497 |
| D. plexippus |
DPOGS210520PA |
| A. aegypti |
AAEL006356 |
| H. melpomene |
HMEL016337-PA |
| S. invicta |
SI2.2.0_14207 |
| A. mellifera |
GB10106-PA |