MidgeBase gene description page [Pn.12727]
Outline
| Gene ID | Pn.12727 |
| Type | Protein coding gene |
| Scaffold | PnScaf17443 |
| Start | 24430 |
| End | 26242 |
| Direction | - |
Sequence
Transcript: 1722 (bp)
ATGATTGCAATCAAATTTTCCAAAGAAAATAATATTTTAGCAGTCCAAAGAACGGAAAACTCTATCGAGATTATTGGATTCAAGAACAATCAAATTGTTCCAGGCCAAATTATTTATTACGAGACAAAGCAAAAGCAGGGAACTATTATTTATGGATTTATCTGGACGGAGCACGATGAGCTTATAGTGATAACTGCGGACTCGGTAGAAATATTTCAAGTGAACATCGCCAAAAAGCAACTAAAGTCTCAAAAGTGCATATCAGCATCGAGCAACTTTTTCATATACAGTCGATCAAATTTCCTCCTCTTATCGTCCAACAATGGCCTTTTGTTAACTCCGGTTTTGATAAAGCAGAGCAGTTTGACAAAATTAACGCCCATTCAAATCGAGGACGGACAGTCTGTGACTGAACGAGAAATTTTCACTGGAACCATCTACAACAACCCCGCAATATTGGTCTTGAAGACAACTCGCAGTCGAACGTTGGAAATTTTGGTGTACATACTCGAGATTCCTGCATTCAGGAAGAAGCACTTGCTCAAGCTTGGACTCAACGGCAGATGTGCCGTCTCCATCATCGACTCTATAATTATCGTTCACCATCAAACGTCCAAAGTGAGTCTGCTGTTTGACGTTGCACTTAGCGAGGACACAGACCCGAACGACAAAAATGTGACCATCCATAATCCACTGGTGGTTGCCAAGTCGATTAAGCCGTTCTGCATCAAACTTCCGACCGTTTCACTGAAAAACGAGGTGATGAATTTTGAGCTGTATTCGGTGAATTGGGTCATTTTTTGTGACATCATAATTGACGTCCGACTCGGATATCTCTTTAAGCTCGAGCTCGTGATCGACAAAGTGCAGATTGGTGACAAAATCAAACTCATTGAATTTCTTATGCATCGACAAAACGCAAAAACTCAACTTTTATCAGTACTTTCCCAACAAATTGTTCCATCAAACGACTACGACGAGATTCACTTGCCCATGCTTGACATAATTTTCGATAAACTCAACAAAGTGTACAAGCAGAAGCTTGATCATGACCTTTCAAAGATGCAGGCCCTTCCTTCGCCTTCTGGCTTTAAATCCTTCACGTCGTCCTCACCGACCGCAACAGTGGCCATCGAATTTCCGAAAGAAGTTGTCATCGAGCAGAATGACATGCTGCAGATTTTCAACACAATCACCGACAAGAACGTCTTGGAGAAGATTCTGATGTCCTACATTTATTCGCTCGTCAAAAATTCCATCACGTGTGAATACGATTTGAGCAAGACATTGATAATTACGCTAGTCGAGAAGAACAAGATAAATGACCTGCAGCAGATACTGAGCTTTCAAATTTTGCTGGAATCGAAACCGCTGGCCTGTTTTCTTCTGTCGCTCGCCAATCATGATAGTTTGATTTCTCAGCTTTCACTCGACATGCTGAAGCGACTGGAGGCCCACGAAATAATTATCGAGATTCTGCTGGAGCAGGGAAAGGTAATCGATGCCATTAGATTGGCAAAGCAACATACCAATGCTGACGTTATTCCTGCCAGAAAGTATCTCGATGCGGCATTAAAGAAAAACGACAAAATGACCTTCTTTTCAATCTTCAATTTCTTCGTCTCGCGAAATCAGCGCTTGAGGGGAACAAATGACTTTTTGAAAAGTGAGCAGTGTGATAACTATGTAAAGGCTTTTGAAGAGCTGTTCCCGACATCTGCA
Protein: 574 (aa)
MIAIKFSKENNILAVQRTENSIEIIGFKNNQIVPGQIIYYETKQKQGTIIYGFIWTEHDELIVITADSVEIFQVNIAKKQLKSQKCISASSNFFIYSRSNFLLLSSNNGLLLTPVLIKQSSLTKLTPIQIEDGQSVTEREIFTGTIYNNPAILVLKTTRSRTLEILVYILEIPAFRKKHLLKLGLNGRCAVSIIDSIIIVHHQTSKVSLLFDVALSEDTDPNDKNVTIHNPLVVAKSIKPFCIKLPTVSLKNEVMNFELYSVNWVIFCDIIIDVRLGYLFKLELVIDKVQIGDKIKLIEFLMHRQNAKTQLLSVLSQQIVPSNDYDEIHLPMLDIIFDKLNKVYKQKLDHDLSKMQALPSPSGFKSFTSSSPTATVAIEFPKEVVIEQNDMLQIFNTITDKNVLEKILMSYIYSLVKNSITCEYDLSKTLIITLVEKNKINDLQQILSFQILLESKPLACFLLSLANHDSLISQLSLDMLKRLEAHEIIIEILLEQGKVIDAIRLAKQHTNADVIPARKYLDAALKKNDKMTFFSIFNFFVSRNQRLRGTNDFLKSEQCDNYVKAFEELFPTSA
| Type | Start | End | Length |
| CDS |
24433 |
26015 |
1583 |
| CDS |
26104 |
26242 |
139 |
| intron |
26016 |
26103 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001841968 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS35176.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-128 |
| InterPro |
IPR009755 |
Colon cancer-associated Mic1-like |
|
| Pfam |
PF07035.7 |
Colon cancer-associated protein Mic1-like |
4.4e-48 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000024410 |
| H. melpomene |
HMEL013835-PA |
| C. quinquefasciatus |
CPIJ000203 |
| H. sapiens |
ENSP00000464875 |
| T. castaneum |
TC002733 |
| S. invicta |
SI2.2.0_04246 |
| N. vitripennis |
NV10982-PA |
| H. sapiens |
ENSP00000269221 |
| D. plexippus |
DPOGS210333PA |
| P. vanderplanki |
Pv.11187 |
| A. gambiae |
AGAP007576 |
| D. melanogaster |
FBgn0035703 |
| A. mellifera |
GB17769-PA |
| A. aegypti |
AAEL008491 |
| B. mori |
BGIBMGA011974-TA |
| H. sapiens |
ENSP00000467007 |
| P. humanus |
PHUM595520-PA |