MidgeBase gene description page [Pn.12707]
Outline
| Gene ID | Pn.12707 |
| Type | Protein coding gene |
| Scaffold | PnScaf17389 |
| Start | 25053 |
| End | 25922 |
| Direction | + |
Sequence
Transcript: 741 (bp)
ATGTCTGACTTTTCAACTTGGTACCAGTCGGTTCCCCGGTTCACCAGATATTGGCTGACGGGAACTGTCGGTTTATCAGTTGCAGAAAAAATTGGCCTAATATCGAGATACACTTTAATGCTAAATTGGTCAATGGCAATCTACAAGTTTGAGATATGGAGACCAATTACAGCAATTTTCTTCTATCCAACATCATTTCACTTCCTCATGAATTGCTTCTTTTTGTACAATTACTCGTCACGACTTGAGAAAGAACATTACCATACATCACCCGGAGACTTCGTATTCATGCTTCTCTTTAACTGGATCTGTACCCTCTGCATATCGTTCTTCTTTGCGCTGCCGGTCCTAATGGATCCGCTCGTTTTGGCAGTTTTATACATTTGGTGTCAACTCAATAAGGAGATTATCGTAACATTCTGGTTTGGATCGAGATTCAAAGCAATGTACCTCCCCTGGGTTCTCTTCGGCTTCAACGTTTTGCTCTCAAACGGAGGCATTCTGTCACTCTTCGGAATATTGATTGGTCATCTCTACTTCTTCCTCAAATTCACCTACCCGCAAGAGCTTGGTGGAGGAGATTTCTTGAAAACACCTCAATTCATCAAGAACTACTTGCCCGACGTTCGCCCAAGCGGAGTGTTTGGGTTTGCGCCAGAAGGAAGGACGACACAGCACAACGAGCCGCCAAGAAGAAGTGGCATTGTTTTTGGAGGTGCCGGCCATCGCCTCGGAGACAAC
Protein: 247 (aa)
MSDFSTWYQSVPRFTRYWLTGTVGLSVAEKIGLISRYTLMLNWSMAIYKFEIWRPITAIFFYPTSFHFLMNCFFLYNYSSRLEKEHYHTSPGDFVFMLLFNWICTLCISFFFALPVLMDPLVLAVLYIWCQLNKEIIVTFWFGSRFKAMYLPWVLFGFNVLLSNGGILSLFGILIGHLYFFLKFTYPQELGGGDFLKTPQFIKNYLPDVRPSGVFGFAPEGRTTQHNEPPRRSGIVFGGAGHRLGDN
| Type | Start | End | Length |
| CDS |
25053 |
25205 |
153 |
| CDS |
25273 |
25464 |
192 |
| CDS |
25524 |
25919 |
396 |
| intron |
25206 |
25272 |
67 |
| intron |
25465 |
25523 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EHJ72630 |
Der1-like domain family member 1 [Danaus plexippus] |
2e-73 |
| InterPro |
IPR007599 |
Derlin |
|
| Pfam |
PF11628.3 |
T-cell surface glycoprotein CD3 zeta chain |
0.09 |
| Pfam |
PF04511.10 |
Der1-like family |
2.2e-57 |
| Pfam |
PF01694.17 |
Rhomboid family |
0.001 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC009744 |
| A. aegypti |
AAEL007229 |
| H. sapiens |
ENSP00000429199 |
| S. invicta |
SI2.2.0_05819 |
| D. melanogaster |
FBgn0031376 |
| A. mellifera |
GB13689-PA |
| H. melpomene |
HMEL016831-PA |
| B. mori |
BGIBMGA004377-TA |
| N. vitripennis |
NV14207-PA |
| P. vanderplanki |
Pv.05114 |
| M. musculus |
ENSMUSG00000022365 |
| A. gambiae |
AGAP009288 |
| H. sapiens |
ENSP00000259512 |
| H. sapiens |
ENSP00000430086 |
| H. sapiens |
ENSP00000384289 |
| D. plexippus |
DPOGS213496PA |
| C. quinquefasciatus |
CPIJ012528 |
| P. humanus |
PHUM549590-PA |
| A. mellifera |
GB12102-PA |
| S. invicta |
SI2.2.0_01632 |