MidgeBase gene description page [Pn.12705]
Outline
| Gene ID | Pn.12705 |
| Type | Protein coding gene |
| Scaffold | PnScaf17389 |
| Start | 5671 |
| End | 13087 |
| Direction | - |
Sequence
Transcript: 1446 (bp)
ATGGAACAGCTCGCATATTTCGTGACGAAATCATTTGAATACTCAAACACAACGAATCGCGTGCTCGAAATAATTAAAATGTCGACAAAGTTCGACGAGAAATCGGATAAGAGTGATTTTAAAATGACCGATGAGTCAGCAAACGACGACACCATGGACGAGGAGGAGGACGTTTCTGTGGATATCGACATCACAAACGATAATTCAAACGACGCGAAAATCTTGCACACGTCGAGTGATCGCGAGGAAAAGAGTGAAAATTGTGATAAAAAAATTAGTGATAAAATTCCTTCCTCGTCCTCCTCCTCCATCGCCACCGCCACAGCCACCACTGCTTCGATCACCAGCCCGACGCCCACGAGCAAAACTGCGACCGAGATTGTCGAAAGAGGTGCCAGCAGTCCGCTTCCTCTCATCAAAAAACTCAATCGCGATGGATCGAAGCATGTGACAAAAAACTGGCTCATCTCAGACTGCCCGAAGAAGAAAACTCCAGACAGCTCCGACTCGTTCTCGACACCTCCAGAAAACCAAGAAAACTCCGCGATGAACCTCATTCGCGTCGACGACCTCATCGGCAAGCGGCAGTCGATGGTTCGGGCGAAACCCGTGAATGAACTTTTAAAACAAATTAGAGAAATTAATAATCAATCGCCTTTACACAAAAACGAAAATTTCAAAGTGGAAGTTGTCGAGGATGAGAAGATAATCAAGACAGATAAAATTGAATCATCTGAGAAAATTGAAAGTGACCTCAATGATATTAAAGATGACAATATACATTCGAATTCGAGCGACAGCAATGTGCTCCAGCTCCTAAAGTCACCATCATCGCCTTCGTTGAGTGGAAACTGCAACAACAAGCAGAGGAGGTCGAGGACGAATTTCACCCTCGAGCAGCTCAACGAGCTCGAGCGGCTCTTCGAGGAAACGCACTATCCAGATGCCTTTGCCAGGGAGGAGCTGAGTCAACGACTGAACCTCAGCGAGGCTCGCGTTCAAGTCTGGTTTCAGAATAGGAGAGCAAAGTGCAGGAAAGCGGAGAATCAATTACACAAAGGGATTCTCATAACGAATCACGCCAGCACCGGATCGATGACGTCGTCGATCGAGTCGTGCCGAGTTGCGCCATATGTCAATGTTCCGGCGAATTTGCGGCAAGTGACGGTCTCGACGCCGAGCACCATTATCACCACGACCAGCGCGACCTCGACGACGTCGTTTCCCTCGGTCGCAGCCTCGTTTTCGGCTTTCGATCCTACGCTGCTCACCGCTGCGCATCAATATGCGGCAGCAATCACAAGTGCAACTCTGGACAGAAGCCTCTTTTCCTTGCCGCAGTATCCGCTCAACTTGGCAACCGCCCTGGCCGCTCACAACAAGAACTCATCCATCGCCGATCTGCGCTTGAAGGCGAAGAACTACGTCGAGGCACTGGGCATAGAG
Protein: 482 (aa)
MEQLAYFVTKSFEYSNTTNRVLEIIKMSTKFDEKSDKSDFKMTDESANDDTMDEEEDVSVDIDITNDNSNDAKILHTSSDREEKSENCDKKISDKIPSSSSSSIATATATTASITSPTPTSKTATEIVERGASSPLPLIKKLNRDGSKHVTKNWLISDCPKKKTPDSSDSFSTPPENQENSAMNLIRVDDLIGKRQSMVRAKPVNELLKQIREINNQSPLHKNENFKVEVVEDEKIIKTDKIESSEKIESDLNDIKDDNIHSNSSDSNVLQLLKSPSSPSLSGNCNNKQRRSRTNFTLEQLNELERLFEETHYPDAFAREELSQRLNLSEARVQVWFQNRRAKCRKAENQLHKGILITNHASTGSMTSSIESCRVAPYVNVPANLRQVTVSTPSTIITTTSATSTTSFPSVAASFSAFDPTLLTAAHQYAAAITSATLDRSLFSLPQYPLNLATALAAHNKNSSIADLRLKAKNYVEALGIE
| Type | Start | End | Length |
| CDS |
5674 |
5835 |
162 |
| CDS |
5893 |
6116 |
224 |
| CDS |
9115 |
9160 |
46 |
| CDS |
9295 |
9306 |
12 |
| CDS |
10675 |
10723 |
49 |
| CDS |
10878 |
11112 |
235 |
| CDS |
12370 |
13087 |
718 |
| intron |
5836 |
5892 |
57 |
| intron |
6117 |
9114 |
2998 |
| intron |
9161 |
9294 |
134 |
| intron |
9307 |
10674 |
1368 |
| intron |
10724 |
10877 |
154 |
| intron |
11113 |
12369 |
1257 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_967102 |
PREDICTED: similar to CG34367 CG34367-PC [Tribolium castaneum] |
2e-58 |
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR003654 |
OAR domain |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF11788.3 |
39S mitochondrial ribosomal protein L46 |
1.6 |
| Pfam |
PF12824.2 |
Mitochondrial ribosomal protein subunit L20 |
0.002 |
| Pfam |
PF05920.6 |
Homeobox KN domain |
0.023 |
| Pfam |
PF00046.24 |
Homeobox domain |
1.4e-24 |
| Pfam |
PF03826.12 |
OAR domain |
6.4e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000453707 |
| H. sapiens |
ENSP00000397099 |
| H. sapiens |
ENSP00000451888 |
| A. mellifera |
GB15894-PA |
| H. sapiens |
ENSP00000452016 |
| H. sapiens |
ENSP00000335505 |
| D. melanogaster |
FBgn0085396 |
| S. invicta |
SI2.2.0_02746 |
| H. sapiens |
ENSP00000450720 |
| H. sapiens |
ENSP00000370990 |
| T. castaneum |
TC001726 |
| H. sapiens |
ENSP00000374240 |
| P. vanderplanki |
Pv.05112 |
| H. sapiens |
ENSP00000453225 |
| N. vitripennis |
NV12766-PA |
| H. sapiens |
ENSP00000419362 |
| D. plexippus |
DPOGS215636PA |
| C. quinquefasciatus |
CPIJ012522 |
| H. sapiens |
ENSP00000370987 |
| H. sapiens |
ENSP00000398704 |
| P. humanus |
PHUM308960-PA |
| M. musculus |
ENSMUSG00000027833 |
| H. melpomene |
HMEL004518-PA |