MidgeBase gene description page [Pn.12640]
Outline
| Gene ID | Pn.12640 |
| Type | Protein coding gene |
| Scaffold | PnScaf17170 |
| Start | 17034 |
| End | 18503 |
| Direction | - |
Sequence
Transcript: 1350 (bp)
ATGGACATTGAAAGCACGAGAAAATTTCTTAAGGCGCGATTGCAACAAGACAGAACAACGTTTTATGGCTTTGCGAACGAGAGAGAGCACATAAAAAATTTATTCTCACGAGCAAAAGATGGCGAGAGCAATTCTGCGCTTCTTATTGGTCCCAAGAAGTGTGGAAAGACAACGCTCATTAACTCAGTCCTGCTGGAGCTAATTCACGACAAAAAGTTTATCGAGAAAACTCTTCTGATTTCGCTGAATGGGCTAATTCACACCGACGATCGTCTTGGTCTCAAATCAACGACTGTGCAAATGAATCTCGAAAAAGAGGTTGAAGGCAAGACATTTTCGTCCTTTTCTGAGAATTTGACTTTCCTCTTGTCCTGTTTAAAAACAGGCAAGGACGCTCAGCGCTTAATATTCATAATTGAAGAATTCGATCTGTTCTGTGCCCATCATAATCAAACTCTGCTTTACAACTTGTTCGATGTGGCTCAATCAGCTCAAACGCCGATCTGCGTGTTGGGCGTAACTCATCGCTTGGATGTTGTCGAGTTGCTGGAAAAGAGAGTCAAGTCTCGTTTCTCGCACCGTCAAATATTTCTGTTGCCGAATAGCAACGACTTGGACGGATACATTCAAGTGTTCAAGGAACTGCTGAAGCTGCCAACTTATACACAAAGCGCCGAGTACGTTGACAAGAACTTGCTTCTGTCGAAAAACATGTTCCAGGAAATTAAATGGCCCTTCCTAAGGCGTCTCTTTAATCCAACGGAATACACATTTTCGAAGAAGCATATTACGGAGTGGAACAAGTCAATCGATCAACTCGCGAAGAAAGAAAAAGTTGTGAATGCGCTGGAAAATCTTTACAACACGAGCGTCACACTTGCAACACTGAAGCTCTTTCTGTTCCAAATTGTCTCGGAGCTGGGTGAAAAGCACTCGAAAATCGAGGACACCGACATCAGCAAGCTGGTCGATCATTTGCTGTTCGAGGACGCAAAAGTAAAGCTGATGACTGGCCTTTCGGTACTCGAACTCTGCATCCTTATCGCGATGAAGCATCACTGCGAAATCTACGACAACGATCCGTTCAACTTTGAGATAATCTTGACGAGATACAATAAATTTGCCTTCAAGTCCTCCACCATGCAGAACATCGATCGGGAAGTCATTCTGAAAGCTTTCGAGAATTTGAAATATCAGGAGCTGATCGAATCGATTGGCGTGGAGGGCAAGATCCAGAAGGAGTACCAAATGCATAAACTCCTCGTTTGCGCCGATCAAATTGACAGAGCCATTCAAAGATACCAAAACCTCCCTACCGAGGTCGAGCATTGGTCGAAGAGTTCAATCATC
Protein: 450 (aa)
MDIESTRKFLKARLQQDRTTFYGFANEREHIKNLFSRAKDGESNSALLIGPKKCGKTTLINSVLLELIHDKKFIEKTLLISLNGLIHTDDRLGLKSTTVQMNLEKEVEGKTFSSFSENLTFLLSCLKTGKDAQRLIFIIEEFDLFCAHHNQTLLYNLFDVAQSAQTPICVLGVTHRLDVVELLEKRVKSRFSHRQIFLLPNSNDLDGYIQVFKELLKLPTYTQSAEYVDKNLLLSKNMFQEIKWPFLRRLFNPTEYTFSKKHITEWNKSIDQLAKKEKVVNALENLYNTSVTLATLKLFLFQIVSELGEKHSKIEDTDISKLVDHLLFEDAKVKLMTGLSVLELCILIAMKHHCEIYDNDPFNFEIILTRYNKFAFKSSTMQNIDREVILKAFENLKYQELIESIGVEGKIQKEYQMHKLLVCADQIDRAIQRYQNLPTEVEHWSKSSII
| Type | Start | End | Length |
| CDS |
17037 |
18001 |
965 |
| CDS |
18062 |
18272 |
211 |
| CDS |
18330 |
18503 |
174 |
| intron |
18002 |
18061 |
60 |
| intron |
18273 |
18329 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653985 |
origin recognition complex subunit [Aedes aegypti] gb|EAT47112.1| origin recognition complex subunit [Aedes aegypti] |
1e-145 |
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR016527 |
Origin recognition complex, subunit 4 |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0000808 |
origin recognition complex |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Pfam |
PF01637.13 |
Archaeal ATPase |
5.5e-06 |
| Pfam |
PF05729.7 |
NACHT domain |
0.13 |
| Pfam |
PF03205.9 |
Molybdopterin guanine dinucleotide synthesis protein B |
0.0044 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
8.5e-09 |
| Pfam |
PF13476.1 |
AAA domain |
0.89 |
| Pfam |
PF00910.17 |
RNA helicase |
0.042 |
| Pfam |
PF13173.1 |
AAA domain |
0.0039 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
3.6e-07 |
| Pfam |
PF13401.1 |
AAA domain |
5.7e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_09824 |
| A. gambiae |
AGAP007063 |
| P. vanderplanki |
Pv.06496 |
| H. sapiens |
ENSP00000437440 |
| H. sapiens |
ENSP00000441953 |
| H. sapiens |
ENSP00000438326 |
| H. sapiens |
ENSP00000376597 |
| T. castaneum |
TC009879 |
| H. melpomene |
HMEL011187-PA |
| H. sapiens |
ENSP00000376598 |
| B. mori |
BGIBMGA009708-TA |
| H. sapiens |
ENSP00000264169 |
| C. quinquefasciatus |
CPIJ004944 |
| D. plexippus |
DPOGS200010PA |
| A. aegypti |
AAEL001785 |
| A. mellifera |
GB10431-PA |
| D. melanogaster |
FBgn0023181 |
| P. humanus |
PHUM348280-PA |
| A. aegypti |
AAEL001781 |
| N. vitripennis |
NV15861-PA |
| H. sapiens |
ENSP00000441502 |