MidgeBase gene description page [Pn.12629]
Outline
| Gene ID | Pn.12629 |
| Type | Protein coding gene |
| Scaffold | PnScaf17153 |
| Start | 38 |
| End | 1310 |
| Direction | - |
Sequence
Transcript: 1182 (bp)
ATGAGCGCGCACGCGAGTCAGGAGAGCAAGGCGGCGGACGAGCTGCTGAAGCAGTACGGCCGCTTCATCCGAGGCTACAAGGAGTCGACGGCGGCGCTGGTCGCGGGCAGGCCCACGAGCGCCACCTTCTTCCGGCTCGGCACCGACCCGTGTCCCGAGAACGCGTCGCTCTTCCACCTGCTCGAGTCGGAGAACAAGCTGCTGACGCGGTGCCTCATCGTGTTCTACCACCTCGCGAGCGAGGCGCGCAAGCTCATCGCGAGCGCCAAGGTCATCGCCTCCCGGCTCGCCACCGTCGAGGACGAGATGGTGGGCGCGTGCGAGGCGGGCGGCGAGCAGTGCGCGCTGGCCAAGTTCAGCTACTCGCTCGAGGACCTGTTCGACATGAAGTTTCTCATCCAGAACGGCATCTTCCTCGCGGCGAACGTCGTGCAGCAGTACTGCGCGCTCTTCTCCATGGAGAAGCTCCTGCACATCACGCCCGGCTCCATCTTCCCCTCCAACCTCGACGATCTGCTGCTGCTGCTGAAGGCCTTCGCCGTCTTCGACGACATCTTCCGCAGCCGGCTCTTTCGCGACTACCTCGCGCGCTACAGCGAGCTCATCGAGCTGCAAATTTTCGAGCAGCGACAGCGGAACGTCGAGGACGCGCGCCTCGCCAGCCTCCAGAACACGCTGCACGAGCTCGACCTGCTCGTGGACGGCAACATCCTGCAGATCGCGCTCGACAACGTGGTCGCGGTGAAGACGCGGGTGCGCGCGCGCAACCTCAAGCAGTTCGAGCAGTTCCTGCTCGCGCACATCAAGAACCTCATCTTCGGCATCGACATCCTCGGCACGAACCTCTCCGAGCTCGGCGACACCGACGACGTGCTGAAGCTGAACGTCGCCGTCGTCGTCTACCAGCGCATGTTCGAGAACATCGACCAGAAGCACCTGCGGCTGGTGGTCGACGTGAACAACAAGTATCCGGCGCTCGTGGTCGAGGGCAATGTCATGATTGCCGGCAATGAGTTCTTGAAGCGATTTCTGCCGAGCGTCTTCGAGAGACTCAACGTCGATGTCGAGAAAGTGCAGCGGAACTACTTGAACCAGCGGATCGGCGACGTGCAGAGGGATGCCGTGCAGCAGTACTCGCTGCAGGTGAGTGAAATTTACTATAAAAGTAGCAAACTGTACATT
Protein: 394 (aa)
MSAHASQESKAADELLKQYGRFIRGYKESTAALVAGRPTSATFFRLGTDPCPENASLFHLLESENKLLTRCLIVFYHLASEARKLIASAKVIASRLATVEDEMVGACEAGGEQCALAKFSYSLEDLFDMKFLIQNGIFLAANVVQQYCALFSMEKLLHITPGSIFPSNLDDLLLLLKAFAVFDDIFRSRLFRDYLARYSELIELQIFEQRQRNVEDARLASLQNTLHELDLLVDGNILQIALDNVVAVKTRVRARNLKQFEQFLLAHIKNLIFGIDILGTNLSELGDTDDVLKLNVAVVVYQRMFENIDQKHLRLVVDVNNKYPALVVEGNVMIAGNEFLKRFLPSVFERLNVDVEKVQRNYLNQRIGDVQRDAVQQYSLQVSEIYYKSSKLYI
| Type | Start | End | Length |
| CDS |
41 |
609 |
569 |
| CDS |
698 |
1310 |
613 |
| intron |
610 |
697 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002401323 |
conserved hypothetical protein [Ixodes scapularis] gb|EEC09346.1| conserved hypothetical protein [Ixodes scapularis] |
3e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes