MidgeBase gene description page [Pn.12608]
Outline
| Gene ID | Pn.12608 |
| Type | Protein coding gene |
| Scaffold | PnScaf17063 |
| Start | 20715 |
| End | 21703 |
| Direction | - |
Sequence
Transcript: 855 (bp)
ATGCTGACGAGTGAAACGATTTATTTTTTGGAGACCCACAATTCAAGTGATCACGAGCTAAACCAAAGACAAGCATGCGCCATTGAGTCGGCCGCCTATATGAACCCAAATGCCAATATATTTGTTCTCTTTCTGACGCCATCAAATCATATACGACTAAAAAATTGGCCTCGATTTCAGAAAATATTAGATTATAAAAATGTTCATTTGAGATACTTCCACATTCACGACATTGTGAAAGATACAGTTGTCGAAAAATTCCTGAGTGATATTGTGAATCAGCACTCAAAGTGGAAAGTACTTCACACGTCTGACACATTGCGGTATGCTTTACTTCACAAATATAGCGGCGTTTATCTGGATCTCGATGTCATCAATAAAGCACCATTAGGGGACATTGAATCCCCTAATTTCGCATGCCTCGAAGACACAAATAGCGTTAATAATGCAATCATCAAACTGAGCGGCGACGATAACGCTCAAACACTCGGAAAAATGTTATTACAAGGTGTAATCTCAAATTTTAACGGCGGTCAGTGGTCAATAGGACCGAGGCTTTTAACAAAAGTAGTCAAAGACTTCTGCGCGATTGATGACTTTAAAAACTCAACGGAGTGTATTGGATTTACGATCATGCCCGTAGAAAAGTGCTATGCGGTTGAAGGTTGGCAATGGAGGTACTTTTTTCAAGAATCTCGATCCGACAGGGTCATGGATGCTGTGAAGAACTCAGTTTTCGTTCACCTCTGGAACTATCAAATGGGTTCGAAAACCGTGAAAACTACTCAGCCTGTTGCTCTCAACTATTTGGCTGCTGAATATTGTCCAGGAGTCTTTGAAACAAACACATTCATC
Protein: 285 (aa)
MLTSETIYFLETHNSSDHELNQRQACAIESAAYMNPNANIFVLFLTPSNHIRLKNWPRFQKILDYKNVHLRYFHIHDIVKDTVVEKFLSDIVNQHSKWKVLHTSDTLRYALLHKYSGVYLDLDVINKAPLGDIESPNFACLEDTNSVNNAIIKLSGDDNAQTLGKMLLQGVISNFNGGQWSIGPRLLTKVVKDFCAIDDFKNSTECIGFTIMPVEKCYAVEGWQWRYFFQESRSDRVMDAVKNSVFVHLWNYQMGSKTVKTTQPVALNYLAAEYCPGVFETNTFI
| Type | Start | End | Length |
| CDS |
20718 |
21066 |
349 |
| CDS |
21131 |
21542 |
412 |
| CDS |
21610 |
21703 |
94 |
| intron |
21067 |
21130 |
64 |
| intron |
21543 |
21609 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_555205 |
AGAP008260-PA [Anopheles gambiae str. PEST] gb|EAL39606.1| AGAP008260-PA [Anopheles gambiae str. PEST] |
1e-40 |
| InterPro |
IPR007652 |
Alpha 1,4-glycosyltransferase domain |
|
| InterPro |
IPR007577 |
Glycosyltransferase, DXD sugar-binding motif |
|
| Gene Ontology(CC) |
GO:0005795 |
Golgi stack |
|
| Gene Ontology(MF) |
GO:0008378 |
galactosyltransferase activity |
|
| Pfam |
PF04488.10 |
Glycosyltransferase sugar-binding region containing DXD motif |
5.9e-13 |
| Pfam |
PF05704.7 |
Capsular polysaccharide synthesis protein |
0.00085 |
| Pfam |
PF04572.7 |
Alpha 1,4-glycosyltransferase conserved region |
4.7e-28 |
| Pfam |
PF12919.2 |
TcdA/TcdB catalytic glycosyltransferase domain |
0.0087 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes