MidgeBase gene description page [Pn.12598]
Outline
| Gene ID | Pn.12598 |
| Type | Protein coding gene |
| Scaffold | PnScaf17048 |
| Start | 29147 |
| End | 31458 |
| Direction | - |
Sequence
Transcript: 396 (bp)
ATGGGCTCAAGACGGGTAGCCAGAAATGTGGCCATCCCACAAGAATCACTATGGTGGTTATTAGCGTTAACGTTCACATTTTTGATTGTAAATACGAGTTCGCAAATGTGGAATGAAATCGATAGCGGTAGCATAGGATTACTCGGCAGATCCAGAAATCGTGATTTCAGAGAACGCGTCACACAAAAAGTACCCGATTCTTACGATATAGTCGACACTGCCAGTGCACAAGTCAGAGGCCCGCCTGCCAAAAATTGCACTGGCTCGGGCTGCTGCATTCCGAAATGCTTTGCCGAAAAGGGAAATCGCGGTTTGCCAGGTGTGCCCGGCTACCCTGGTCCGAAAGTTAAGTATATCGTCCATTGCATGGTTAACTTTGATTCCTTTCCAATGCGG
Protein: 132 (aa)
MGSRRVARNVAIPQESLWWLLALTFTFLIVNTSSQMWNEIDSGSIGLLGRSRNRDFRERVTQKVPDSYDIVDTASAQVRGPPAKNCTGSGCCIPKCFAEKGNRGLPGVPGYPGPKVKYIVHCMVNFDSFPMR
| Type | Start | End | Length |
| CDS |
29150 |
29226 |
77 |
| CDS |
29311 |
29576 |
266 |
| CDS |
31406 |
31458 |
53 |
| intron |
29227 |
29310 |
84 |
| intron |
29577 |
31405 |
1829 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001846672 |
collagen IV alpha 1 chain [Culex quinquefasciatus] gb|EDS44339.1| collagen IV alpha 1 chain [Culex quinquefasciatus] |
2e-13 |
| Pfam |
PF04756.8 |
OST3 / OST6 family |
0.13 |
| Pfam |
PF01770.13 |
Reduced folate carrier |
0.094 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06645 |