MidgeBase gene description page [Pn.12591]
Outline
| Gene ID | Pn.12591 |
| Type | Protein coding gene |
| Scaffold | PnScaf17048 |
| Start | 13540 |
| End | 15672 |
| Direction | - |
Sequence
Transcript: 1287 (bp)
ATGCCTTACACAAAATACTGCTTACGCTTACCTGGACGTGACGGCTTACCCGGCTTGGAAGGCAGAAAGGGAGAAAGAGGATTCCCAGGACCAAAGGGAGATCAAGGTTTACCAGGCCCGATTGGCTTGCAAGGCGAGAAGGGCGATCAAGGTTTCCCCGGTAGAAATGGTGCTAACGGAATACCCGGTATCAAGGGTGATAAGGGATTGCAAGGACTACCCGGACTTCCAGGACCTGTAGGTTATCCAGGCGACAAAGGAATGCAAGGTCCTCGTGGAAATGATGGTTTGCAGGGTTTGCCTGGTACGCCGGGTGAAAAGGGAGAGCCAGGTCTTCAAGCACCACCGCCTATTATTGGACCACCAGGAAAGCCGGGATTGCCTGGACAAAAGGGAGACAGAGGACTTCCAGGTGCTCCGGGTCTGATCGGTCTGCAGGGTGAGAGAGGAGAACAAGGAGAGATTGGTTTGATCGGAGTTGAAGGTCAAAGAGGTTTACCTGGTCCTAGAGGTGAAATCGGTTTGTCTGGCCCGCCAGGTAGAGACGGTGCCCCAGGTTTGCCTGGCGCGAAAGGAAATGCTGGACTTCCTTGCTCGGCAGCTCAAGACTACCTAACGGGTCTCCTCTTGGTTAAGCACAGTCAGTCGGAAGATATTCCACAGTGTGAACCGGGACACGTAAAGCTATGGGACGGCTACTCACTTATGTATGTCGATGGCAACGATTATCCAGCCAATCAGGACTTGGGCTCGCCCGGTTCATGCGTCCGCAAATTCTCCACAATGCCGGTCATGGCTTGCGGCCAAAACAACGTCTGCAATTATGCATCACGCAACGATCGTACCTTCTGGCTTTCGACTTCAAAGGAAATTCCAATGATGCCTGTGTCAGACTTCGAAATGCGTCCATATATCTCGCGCTGCGCCGTCTGCGAAGTTCCTTCAAACGTCATCGCAATTCACAGCCAATCGCAGCAAGTTCCTGAATGTCCACAAGGCTGGGACTCACTCTGGATCGGTTACACATTCATGATGCATACCGCCGTTGGTCATGGTGGTGGCGGCCAAGCGCTCTCTGGACCTGGCTCGTGCTTGCAAGATTTCCGCGCCACACCATTCATCGAATGTAACGGAGGCAAGGGTCAATGTCATTACTACGAGACAATGACGAGCTTCTGGATGGTAACAATCGACCAACAAAATCAATTCCGTACACCCGAGCAGCAGACTCTCAAGGCAGGAACTCTCCATACAAAAGTTTCAAGATGTAACGTGTGCATACGAATA
Protein: 429 (aa)
MPYTKYCLRLPGRDGLPGLEGRKGERGFPGPKGDQGLPGPIGLQGEKGDQGFPGRNGANGIPGIKGDKGLQGLPGLPGPVGYPGDKGMQGPRGNDGLQGLPGTPGEKGEPGLQAPPPIIGPPGKPGLPGQKGDRGLPGAPGLIGLQGERGEQGEIGLIGVEGQRGLPGPRGEIGLSGPPGRDGAPGLPGAKGNAGLPCSAAQDYLTGLLLVKHSQSEDIPQCEPGHVKLWDGYSLMYVDGNDYPANQDLGSPGSCVRKFSTMPVMACGQNNVCNYASRNDRTFWLSTSKEIPMMPVSDFEMRPYISRCAVCEVPSNVIAIHSQSQQVPECPQGWDSLWIGYTFMMHTAVGHGGGGQALSGPGSCLQDFRATPFIECNGGKGQCHYYETMTSFWMVTIDQQNQFRTPEQQTLKAGTLHTKVSRCNVCIRI
| Type | Start | End | Length |
| CDS |
13543 |
13794 |
252 |
| CDS |
13856 |
14379 |
524 |
| CDS |
14451 |
14523 |
73 |
| CDS |
14587 |
14639 |
53 |
| CDS |
14698 |
14750 |
53 |
| CDS |
14805 |
14886 |
82 |
| CDS |
14955 |
15000 |
46 |
| CDS |
15058 |
15110 |
53 |
| CDS |
15171 |
15214 |
44 |
| CDS |
15278 |
15359 |
82 |
| CDS |
15648 |
15672 |
25 |
| intron |
13795 |
13855 |
61 |
| intron |
14380 |
14450 |
71 |
| intron |
14524 |
14586 |
63 |
| intron |
14640 |
14697 |
58 |
| intron |
14751 |
14804 |
54 |
| intron |
14887 |
14954 |
68 |
| intron |
15001 |
15057 |
57 |
| intron |
15111 |
15170 |
60 |
| intron |
15215 |
15277 |
63 |
| intron |
15360 |
15647 |
288 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001962982 |
GF15711 [Drosophila ananassae] gb|EDV32203.1| GF15711 [Drosophila ananassae] |
1e-151 |
| InterPro |
IPR016187 |
C-type lectin fold |
|
| InterPro |
IPR001442 |
Collagen IV, non-collagenous |
|
| InterPro |
IPR008160 |
Collagen triple helix repeat |
|
| Gene Ontology(CC) |
GO:0005581 |
collagen |
|
| Gene Ontology(MF) |
GO:0005201 |
extracellular matrix structural constituent |
|
| Pfam |
PF01391.13 |
Collagen triple helix repeat (20 copies) |
4.5e-33 |
| Pfam |
PF01413.14 |
C-terminal tandem repeated domain in type 4 procollagen |
2.2e-85 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000380382 |
| D. melanogaster |
FBgn0016075 |
| P. vanderplanki |
Pv.17128 |
| P. humanus |
PHUM136040-PA |
| A. mellifera |
GB14564-PA |
| B. mori |
BGIBMGA014039-TA |
| H. melpomene |
HMEL002288-PA |
| T. castaneum |
TC013472 |
| S. invicta |
SI2.2.0_02661 |
| H. sapiens |
ENSP00000445236 |
| H. sapiens |
ENSP00000353654 |
| H. sapiens |
ENSP00000443707 |
| N. vitripennis |
NV11106-PA |
| M. musculus |
ENSMUSG00000031273 |
| D. plexippus |
DPOGS206535PA |
| H. melpomene |
HMEL002285-PA |
| A. gambiae |
AGAP009200 |
| P. vanderplanki |
Pv.11194 |
| B. mori |
BGIBMGA014040-TA |
| D. plexippus |
DPOGS206549PA |
| H. sapiens |
ENSP00000378340 |
| D. melanogaster |
FBgn0000299 |
| C. quinquefasciatus |
CPIJ802363 |
| M. musculus |
ENSMUSG00000031502 |
| H. sapiens |
ENSP00000334733 |
| H. sapiens |
ENSP00000443348 |
| S. invicta |
SI2.2.0_09523 |
| A. mellifera |
GB13353-PA |
| P. humanus |
PHUM136030-PA |
| H. sapiens |
ENSP00000364979 |
| A. gambiae |
AGAP009201 |
| H. sapiens |
ENSP00000361290 |
| P. vanderplanki |
Pv.17126 |
| T. castaneum |
TC014326 |
| C. quinquefasciatus |
CPIJ802355 |