MidgeBase gene description page [Pn.12574]
Outline
| Gene ID | Pn.12574 |
| Type | Protein coding gene |
| Scaffold | PnScaf17020 |
| Start | 9545 |
| End | 11621 |
| Direction | + |
Sequence
Transcript: 1452 (bp)
ATGTCGTGTGCAGGAAAAAAATGCGGAAAAGGCCCGGGCTATCCGTCGCCGATGTGGGCCTTCAAAAATGGTCCGCGCGAGGAGCTTCTGTATGTCGTTACCGTGCAGCCGAATTTGGACGAGGAAAACGGCGATTATCTGTCGGTGGTTGATGTCGACCCAAAGAGCCCGACATTCTGTCAAGTCACTCATCGGGCATTTAGCGGCCGAAAGGGGCAAGAGTTTCATCACATCGGCTGGAACACATGCTCGAGCTGCCATTTCGTCGACGCCTCGTGCACGAGCATTCCTTCGAGAGACAAGCTCGTGTTGCCGTGTCTTATGTCCGACGCCGTTTACGTCTTCGACGTCGGCCACGACCCGAAGCGACCGAAAATCCACAAAATCATCGAGGGAGATGTGCTGCGCGAGCACGACGTTTCAGCGGGCCACACTTCGCACTGCCTGCCCTCGGGCAACGTCATGATATCGACGATGGGCGACAAGAATGCGAACGCCAAGGGCGAGTTCATTCTGTTCGACGGCAACTTTGATTGCGTCGGAACGTGGACAGTTGGTGACACGGCGCTGTGCGGTTACGACTACTGGTATCAGCCCTACTTCAATGTAATGATTGCGAGCGAGTGGGGAGCTCCGCGCCTCTTCCGACGCGGCTTCAATCCGGACGATCTCAAGTCCGTACGTGATTACGGAAGGCGTCTTAATGTTTATGCGTGGAGCGAGAGGAAGTTAATCGATACAATCGATTTGGGTGAGGAAGGAATTGCTCCGCTGGAAATTCGTTTCATGCATGATCCGAAACGATGCGAGGGCTTCGTCGGTGCGTCGCTGTTCAGCAAAGTTTTCCGCTTCTACAAGAAAAATCCCAGCGACGAGAAGTTTACGGTCGAGAAAGTCATCGATGTGCCGTCGAAGAAGGTTGAGGGATGGATAATGCCCGAGATGAACGGTCTAATGACTGACATTCTCCTCTCGCTCGACGATCGCTTCATTTACTTCAGCAACTGGTTCCACGGCGACGTCCGGCAGTACGACATCAGCGACCCGGCCCATCCGAAGCTCACCGGCCAGGTGTTCGTGGGCGGCATGCTGCTCAACGACTCCGGCGTGAAGGTCACCGAGGACAAGGAGCTGAAGGAGCAGCCGGCACCGACTGTGCTGAAGGGTCGTCGACTCTACGGCGGACCGCAAATGCTCCAGCTCAGCCTGGACGGAAAGCGGCTGTACGTGAGCTCATCGCTCTTCTCGCCGTGGGACAAGCAATTCTACCCGGACATGGTAAAGAATGGCGGCACAATCATCATGATCGATGTCGACATCGAGAAGGGCGGAATGACGTTGAACGAGGACTTCCTTGTCGACTTCGGCAGCGAGCCAAATGGACCGACTCTGCCGCACGAGATGCGCTATCCTGGAGGTGATTGCTCCTCCGACATCTGGCTTGCCGACGAC
Protein: 484 (aa)
MSCAGKKCGKGPGYPSPMWAFKNGPREELLYVVTVQPNLDEENGDYLSVVDVDPKSPTFCQVTHRAFSGRKGQEFHHIGWNTCSSCHFVDASCTSIPSRDKLVLPCLMSDAVYVFDVGHDPKRPKIHKIIEGDVLREHDVSAGHTSHCLPSGNVMISTMGDKNANAKGEFILFDGNFDCVGTWTVGDTALCGYDYWYQPYFNVMIASEWGAPRLFRRGFNPDDLKSVRDYGRRLNVYAWSERKLIDTIDLGEEGIAPLEIRFMHDPKRCEGFVGASLFSKVFRFYKKNPSDEKFTVEKVIDVPSKKVEGWIMPEMNGLMTDILLSLDDRFIYFSNWFHGDVRQYDISDPAHPKLTGQVFVGGMLLNDSGVKVTEDKELKEQPAPTVLKGRRLYGGPQMLQLSLDGKRLYVSSSLFSPWDKQFYPDMVKNGGTIIMIDVDIEKGGMTLNEDFLVDFGSEPNGPTLPHEMRYPGGDCSSDIWLADD
| Type | Start | End | Length |
| CDS |
9545 |
9557 |
13 |
| CDS |
9624 |
9945 |
322 |
| CDS |
10036 |
10460 |
425 |
| CDS |
10927 |
11618 |
692 |
| intron |
9558 |
9623 |
66 |
| intron |
9946 |
10035 |
90 |
| intron |
10461 |
10926 |
466 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863949 |
selenium-binding protein 2 [Culex quinquefasciatus] gb|EDS39401.1| selenium-binding protein 2 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR008826 |
Selenium-binding protein |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008430 |
selenium binding |
|
| Pfam |
PF05694.6 |
56kDa selenium binding protein (SBP56) |
4.9e-191 |
| Pfam |
PF08309.6 |
LVIVD repeat |
0.06 |
| Pfam |
PF10282.4 |
Lactonase, 7-bladed beta-propeller |
0.034 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000068877 |
| H. sapiens |
ENSP00000406222 |
| S. invicta |
SI2.2.0_11821 |
| D. melanogaster |
FBgn0038115 |
| P. humanus |
PHUM280460-PA |
| D. plexippus |
DPOGS207287PA |
| C. quinquefasciatus |
CPIJ013577 |
| T. castaneum |
TC010368 |
| H. melpomene |
HMEL016303-PA |
| P. vanderplanki |
Pv.01069 |
| H. sapiens |
ENSP00000397261 |
| P. vanderplanki |
Pv.02673 |
| A. mellifera |
GB11771-PA |
| B. mori |
BGIBMGA012019-TA |
| A. gambiae |
AGAP011531 |
| H. sapiens |
ENSP00000396209 |
| N. vitripennis |
NV13636-PA |
| H. sapiens |
ENSP00000357861 |
| H. sapiens |
ENSP00000408263 |
| H. sapiens |
ENSP00000413960 |
| A. aegypti |
AAEL001937 |