MidgeBase gene description page [Pn.12571]
Outline
| Gene ID | Pn.12571 |
| Type | Protein coding gene |
| Scaffold | PnScaf17020 |
| Start | 1781 |
| End | 2042 |
| Direction | - |
Sequence
Transcript: 201 (bp)
ATGATCATTCCTATTCGTTGTTTCACCTGCGGAAAAGTTATTGGAAATAAATGGGAGGCGTATTTAGGACTGCTGCAGGCAGAATACACTGAAGGTGATGCTCTCGATGCTTTGGGACTAAAGAGGTATTGCTGCAGAAGAATGCTTCTTGGACACGTTGACTTGATTGAAAAGCTACTCAATTATGCACCACTGGAACGC
Protein: 67 (aa)
MIIPIRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLER
| Type | Start | End | Length |
| CDS |
1784 |
1889 |
106 |
| CDS |
1948 |
2042 |
95 |
| intron |
1890 |
1947 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001233059 |
PREDICTED: uncharacterized protein LOC770704 [Gallus gallus] |
3e-33 |
| InterPro |
IPR009057 |
Homeodomain-like |
|
| InterPro |
IPR023580 |
RNA polymerase subunit RPB10 |
|
| InterPro |
IPR000268 |
DNA-directed RNA polymerase, subunit N/Rpb10 |
|
| InterPro |
IPR020789 |
RNA polymerases, subunit N, zinc binding site |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF05864.7 |
Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) |
0.057 |
| Pfam |
PF01194.12 |
RNA polymerases N / 8 kDa subunit |
5.2e-31 |
| Pfam |
PF14149.1 |
YhfH-like protein |
0.076 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL016316-PA |
| D. melanogaster |
FBgn0039218 |
| P. vanderplanki |
Pv.06655 |
| M. musculus |
ENSMUSG00000074846 |
| N. vitripennis |
NV16852-PA |
| A. mellifera |
GB15729-PA |
| C. quinquefasciatus |
CPIJ005859 |
| H. sapiens |
ENSP00000324124 |
| H. sapiens |
ENSP00000432807 |
| A. aegypti |
AAEL014831 |
| D. plexippus |
DPOGS215448PA |
| A. gambiae |
AGAP011761 |
| M. musculus |
ENSMUSG00000038489 |
| B. mori |
BGIBMGA005739-TA |