MidgeBase gene description page [Pn.12566]
Outline
| Gene ID | Pn.12566 |
| Type | Protein coding gene |
| Scaffold | PnScaf16965 |
| Start | 53707 |
| End | 56278 |
| Direction | - |
Sequence
Transcript: 2505 (bp)
ATGGGCGACTTTGGCGATAGATTTAAGGCGAAAAAAAGTTTTCATCCTCAATACCTTCACGATCAACTTATAGAGAATAACCCTAAGAAAATTCAATTTCAAAATCACTACGAAATAGTTCTTGATCGCCCAAATTTTCAAATTTGCACCCCTAACTGCCTAAACTATGACGAACAAATGCTCCGATCGCCCGACAACTGGCACCAAATCATTATAAGTCACAATGGCAGACTTACAAAGACTCAAATATTGTCAGCTCTTGAAAGTCTCACAACCTCGGCAGTTTTCATTCCAATCGCTTATCGCAGCGATCGTACGCAGGATAGCTTTTTTGTGATCAAGCAGTACCATGCTCTTGAAATCCTGTTCAGTGAAGGACTCAAATTTTCGGTAAACAACCACTATTACAGTATAACCGTTAAAATTGCAGTCGCTCAGTATCATAACAAGCAAATCGACGCCTACTATCAGCTCAGCAAACTCGTCTCAAAATATCTTACTACAATTCGTGATGGCAAACTCGACCTTACAAATTGCGTTCGAAACCCGGAACTAATTGACTTGGACTTTTCGCTCACAAACGAGGCAAACTTTGATCTGTTCTGCAAGTGCATAGCAAATCAGTTGAGAGGAGCAGACTCTTTGAGGATGCTCATTTTGAACAGGAACAGGATCAGGCATCTTAAGCCCCTCATGATTTTCAAGAACTTTCCTTCGCTAATATCGCTCACGTTAAGAAACAACATGATTGATTCGATGGACGAATTTCTGTGCCTCGGCTGTCTCAACTTAAAAACTCTAAATTTGAATGGAAATCCAATTGTGGAAGGTGATACGTCCGCCATCAATGAAAAACTCATGAAAATCCTTCCCACGCTCGAGTACACAGATTTGGCGAAACTAATGGCATGCGAGCATCGTCCGCCTGCAGAGGTTGTTTCGAAAATTAATGAGGAGGTGATTAAAGTGAGTGACATTAACGACAAATTCAAAGCCGACTTCCCAAGGCGTGAGACTGTCAAAAATTACTGGAATCTAGTGGTTATTGAGCACGATGGCAAGTTCGATGGAAAAGAGGTTCTGAACGAAATGTACACTCAGTTTTTCGACTCAGATCCGTGTCATCCGTGCTACTTCAAAAAAGGCGAACGCGAAGACTCGTTTATGTTGCACTTGAACTTTGAACCTCTCAACATTCTCGTTCAAAACAATTTGAAAATGAAACGCAAAGATGATGGAGTTGTGACATTCAGACTGCACCTGAAGCATGCGATTTTCAATCAGGAGCAGGTTAAGTGGGAGGAGGTCGTTGCGAGAGTTATCGAGAAGAGATGCACGCCAGCAAAATTGGATTTGAAAAACTTTCGAGCTGATCCTGAGCTCAAAGATATCATCGTGTGTTTGTCGTCAAATTACGAGCTCGAGTATGTGCTCAAGCTTGCTATGAACAGGAATCCCCACATCATTGACGTTGATTTGAGTCACAATCAATTACGTGGGCTACGAGGACTCGAAATTCTGAAGCAGCATTCTCAAATCAAATGTCTGGATTTGACGCACAACAACATCTCGACACTTGCAGAATTTCCTGAAGGGCTTCCGGTAATTGAGCTCAAAATGGACAGAAACCCGATTTGCGATAAGTTTCAAATGAGTGGACTGCCATCGGCCTATGAATATGTGCGAATTTTTTCACATCTCTGCCCGAACCTTCAATTCATTGACAACAAAAAAATCGACCGCACAGTCAAGATGGTGACCTTCCAAAATTTCTTCCCAACTCCAAAAAGCTACTTAGCGGTTGAAAACTTTGTTAACTTTTTCTTTAAAAAATTCGAGAGTGCCAAGAACCGTCAGTTTTTGTGCAGCATTTACAACAATGTGTCGCGGCTGACAGTGAGAAATGGAACGAGGAAATTTGAACTGCAAAGGCAAGTCGAAATTATAGACTACTATGCATCCCTCCCCGAGTACGAGTTTGACTACGTCACAATGACTGTCGATGCACCAATTTTCTGGTCATTCAATCCTCATTTTCCTAAAGAGTCCATTCAAATCGTTGTCAATGGCGTGTTTAGATTGAAGGACGACCACGAAAAGCTGTTCACGTTCTGTCGAACTTTTTTCCTCAAGCGAGACAAGTCGGACAAGCTGGCGGGTCGTGCAAGGGGTACGCTTTCGAACACGTACTACTTTCACATCATAAACGAAATTCTTCATTTTGACTTCGCTAGAGACGAAAGCACGATAAACAAAGCATTTCGGTATGCTCAAGCAACGCCCGGCGAGATCGAGAGTGCATTTATCAACGACACCCACGAACAGAGATTCAGAGAAAAACTCAAATTGCTCGAGCAAACAATCATGATGAAGCCACAGTGGTGCAGGAGGTTCCTAGAAGAGGCGAATGGTGATTTCAAGGAGGCACTCGACTTGTTCATTCAGTTCTATGAGAAAAATATTTTTAAACCTGAAGACTTTTTGTTGCATCTGATGGCTTCCAAA
Protein: 835 (aa)
MGDFGDRFKAKKSFHPQYLHDQLIENNPKKIQFQNHYEIVLDRPNFQICTPNCLNYDEQMLRSPDNWHQIIISHNGRLTKTQILSALESLTTSAVFIPIAYRSDRTQDSFFVIKQYHALEILFSEGLKFSVNNHYYSITVKIAVAQYHNKQIDAYYQLSKLVSKYLTTIRDGKLDLTNCVRNPELIDLDFSLTNEANFDLFCKCIANQLRGADSLRMLILNRNRIRHLKPLMIFKNFPSLISLTLRNNMIDSMDEFLCLGCLNLKTLNLNGNPIVEGDTSAINEKLMKILPTLEYTDLAKLMACEHRPPAEVVSKINEEVIKVSDINDKFKADFPRRETVKNYWNLVVIEHDGKFDGKEVLNEMYTQFFDSDPCHPCYFKKGEREDSFMLHLNFEPLNILVQNNLKMKRKDDGVVTFRLHLKHAIFNQEQVKWEEVVARVIEKRCTPAKLDLKNFRADPELKDIIVCLSSNYELEYVLKLAMNRNPHIIDVDLSHNQLRGLRGLEILKQHSQIKCLDLTHNNISTLAEFPEGLPVIELKMDRNPICDKFQMSGLPSAYEYVRIFSHLCPNLQFIDNKKIDRTVKMVTFQNFFPTPKSYLAVENFVNFFFKKFESAKNRQFLCSIYNNVSRLTVRNGTRKFELQRQVEIIDYYASLPEYEFDYVTMTVDAPIFWSFNPHFPKESIQIVVNGVFRLKDDHEKLFTFCRTFFLKRDKSDKLAGRARGTLSNTYYFHIINEILHFDFARDESTINKAFRYAQATPGEIESAFINDTHEQRFREKLKLLEQTIMMKPQWCRRFLEEANGDFKEALDLFIQFYEKNIFKPEDFLLHLMASK
| Type | Start | End | Length |
| CDS |
53710 |
56001 |
2292 |
| CDS |
56066 |
56278 |
213 |
| intron |
56002 |
56065 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651793 |
nuclear RNA export factor 2 (NXF2), putative [Aedes aegypti] gb|EAT42411.1| nuclear RNA export factor 2 (NXF2), putative [Aedes aegypti] |
1e-52 |
| InterPro |
IPR015245 |
Nuclear RNA export factor Tap, RNA-binding domain |
|
| InterPro |
IPR018222 |
Nuclear transport factor 2, Eukaryote |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(BP) |
GO:0006406 |
mRNA export from nucleus |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
4.6e-13 |
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.4e-11 |
| Pfam |
PF09162.5 |
Tap, RNA-binding |
1.3e-05 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
0.03 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
0.036 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.018 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01795 |