MidgeBase gene description page [Pn.12538]
Outline
| Gene ID | Pn.12538 |
| Type | Protein coding gene |
| Scaffold | PnScaf16843 |
| Start | 49 |
| End | 2044 |
| Direction | - |
Sequence
Transcript: 495 (bp)
ATGGTTGCCCTAAATCACGATTTTATCCAAAGTACTGTCTTGCAAAATTACAACTTGGGCCGAACGCAGCTGTGCCGAGCAGACATGCAAAACATCGCAAACTGGGTGTTCAATGAAACCCTTATCGATGACACCCAATATCCCGGTCTCACTGAGACGGGCTGGCAGGAGTGGCTTGGAATCGGTCAGAGATTCCAACAGGCTTTTCCCGAAGTTCTACCACCAGTTTATCAAACCAACCGCTTTCTCTTTAGACATACAAGTAGCGAAAGAACGACGCTGAGTCTTCACGCCTTCGCTGACGGCTTGTTCGGTGAAAATGCACACAGGAACGTCAGTTTTGCTCTCATTCCAAATCCTGACATCAAACTCAGAAACTGTATTCTCGGTGACAATACAATATTGCACCTCATGACAACTGCCCACTTCTTAGTGAAGCCAGAGGTAACACCGTCGAGATGGATGCTTTTGAACAGGGTCCTGAGTTCCAGGAGA
Protein: 165 (aa)
MVALNHDFIQSTVLQNYNLGRTQLCRADMQNIANWVFNETLIDDTQYPGLTETGWQEWLGIGQRFQQAFPEVLPPVYQTNRFLFRHTSSERTTLSLHAFADGLFGENAHRNVSFALIPNPDIKLRNCILGDNTILHLMTTAHFLVKPEVTPSRWMLLNRVLSSRR
| Type | Start | End | Length |
| CDS |
52 |
139 |
88 |
| CDS |
925 |
956 |
32 |
| CDS |
1670 |
2044 |
375 |
| intron |
140 |
924 |
785 |
| intron |
957 |
1669 |
713 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFX83810 |
hypothetical protein DAPPUDRAFT_301637 [Daphnia pulex] |
8e-16 |
| InterPro |
IPR000560 |
Histidine phosphatase superfamily, clade-2 |
|
| Gene Ontology(MF) |
GO:0003993 |
acid phosphatase activity |
|
| Pfam |
PF00328.17 |
Histidine phosphatase superfamily (branch 2) |
9.7e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes