MidgeBase gene description page [Pn.12527]
Outline
| Gene ID | Pn.12527 |
| Type | Protein coding gene |
| Scaffold | PnScaf16823 |
| Start | 576 |
| End | 2106 |
| Direction | + |
Sequence
Transcript: 906 (bp)
ATGGCACTGTTACCGATTCTTTTGGACATGGTCGATGAGATTTACGATAATCTCGACAACCCGTCGAAGAACTTCTCAGAGGTTCCTCTCTTGTTCCTACCTCAGCGAAGTGAGCGCGTCTGCCCTCGCATGAGCAAGCGCGAGCGCGGCTGCCCAAAACGTGAATCAAGCGAACCAAAAGAGTGCCCCACTAGGGAATGCCCGAAGGCCAACGAAAAGGAGGAGGAAACGAAAGCCTGCACGTCTGCACAAGGCTCGAGTTCAAAGGGAAAATGCGAGAAGAATGAATGTCCACGTGCATGGAATGCCCTCGCATTTTACGATCACCCATGGAGCCGGCAACTTCCGTTGGAAGTCATGCGAAGATATCACCACGGAGGCCTACGAAAATGCCCCGTCAAAACACCAGACGACTTTCACATCACGATCGACGTGAAATCGTTCAAGCCCGAAGAGATCTCCGTGAAGGTCAAGGAGCGCGACATCATCGTCGAGGGAAAGCACGAGGAACGTGCGGACGAATTTGGCTTCGTCTCCCGGCAATTCACTCGCCGCTACATTCTGCCCGAGGACTACGACATCGACACCGTCTCGTCGTATCTGAGCGCCGACGGAAAGATGATTATCAAGGCGTCCAAGCCGAAGCCAGCACTCGAAACTGGTGAGCGCATCATTCCGATTGAACGCGTAAAGTCGACGCAGGAGAGAGAGGAGGAGGCTAAAACTGAGGCAACCGCAGTGGATAATGCTGAGAAAGCAGCTGACGCCAATTCTAACGAGGAGAAGCCGAAAGATTTTATCAACAATTATCATTTCACTTCTCCAAATAAATGTGTGACATTTTCATTCACGACTGACTCACAATTGTGCATGATCGAGAGGAAAGAAGATTTGGCCGAAGAAGGG
Protein: 302 (aa)
MALLPILLDMVDEIYDNLDNPSKNFSEVPLLFLPQRSERVCPRMSKRERGCPKRESSEPKECPTRECPKANEKEEETKACTSAQGSSSKGKCEKNECPRAWNALAFYDHPWSRQLPLEVMRRYHHGGLRKCPVKTPDDFHITIDVKSFKPEEISVKVKERDIIVEGKHEERADEFGFVSRQFTRRYILPEDYDIDTVSSYLSADGKMIIKASKPKPALETGERIIPIERVKSTQEREEEAKTEATAVDNAEKAADANSNEEKPKDFINNYHFTSPNKCVTFSFTTDSQLCMIERKEDLAEEG
| Type | Start | End | Length |
| CDS |
576 |
1369 |
794 |
| CDS |
1992 |
2103 |
112 |
| intron |
1370 |
1991 |
622 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADM13385 |
small heat shock protein 23 [Polypedilum vanderplanki] |
4e-33 |
| InterPro |
IPR001436 |
Alpha crystallin/Heat shock protein |
|
| InterPro |
IPR002068 |
Heat shock protein Hsp20 |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| Pfam |
PF07873.6 |
YabP family |
0.059 |
| Pfam |
PF00011.16 |
Hsp20/alpha crystallin family |
2.7e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.12119 |