MidgeBase gene description page [Pn.12485]
Outline
| Gene ID | Pn.12485 |
| Type | Protein coding gene |
| Scaffold | PnScaf16601 |
| Start | 695 |
| End | 4034 |
| Direction | + |
Sequence
Transcript: 1464 (bp)
ATGCAGGCAAATCGAATCTCGGACACTTTCAGAGGCCAGTGCGTCTTCATGACTGGCGCGACTGGCTTTATGGGGAAGGTCTTCCTCGAGCGCCTTCTGCGAGTCACCGAGGTGCGCAAGATTTTCGTTCTGATCCGAACGAAGCGTGGCAAAAATGCTGACGATCGCCTCGCAGACATCTTTAAAAATCCTCTCTTTGACAAGCTGAAGGCGAGTCGACCACTGGCGCAGATCCTCGAGCGAGTGCAGGTCGTGAGCGGCGACTGCGGCTTCAAGCGCCTCAACCTCTCGGCCGACGACCACGCCGCCATCACGCGCAGCGTCTCCATGATCTTCCACTTCGCCGCGACCGTGAAGTTCACCGAGAAGTTCAAGCGCGCCATCGAGCTCAACGTGCGCGGCACCCGCGAGATGATCCAGCTCGCGCTCGAGTGCGAACACCTGCAAGTGTTCTGCCACATCTCGACCGCCTACAGCCATCTCTCCGAAAAAGTGCTGCTTGAGAAGGCCTACGAGCCCCCGGCCGACCCGCACAAGATGATCGAGGTGGCCGAGAGTTTTGACGAGGAGAAGGTGGAGCAACTGCTGAGCAGTTATTTGTGCGAGCACGTGCCCAACAGCTATGTCTTCACGAAGGCTCTTTCCGAGGCGCTTGTTGCGAAGGCCCACAAGCAGTTCAACCTACCGGCCATCATTTGTCGGCCGGCCATTATTTTGGCCGCTTACAAGGACCCTTTGCCAGGCTGGACGGACAATCTCTACAACATCACGGGCATCCTTTCGGCTGGAGGCCTCGGCATACTGCGCTCCTTCTGTGCCAAAGACGACTCGAAGGTCAATATCACTTGCGTTGACTACACGATAAACAATGTCATGAGCAGCACGTGGCATTACCTGCACGAGAGAATGTCGTCGTTGTATGTCGTGAACCTCGAGTACATTACGCTGAGTCTGATCGGAAGTTTCAGGAAGTCGATTTACGTCAGTCGAGGGGAGATGCCGTTCGACTTTGTCATGTGGTACCCGAATGTCCACTTTACCGAAAGCAAGTTCATCCATCTCTCCAACGTGGTTCTTTTCCAGTGGATTCCGTCGCTGTTGCTTGATTTACTTCTGATGGCATTCAGAAGGAAACCAGTGCTCATCAAAGCCCAGAAGAAGATGTTCAAGGAGCTCGAGGTCATTTCGGTGTTCGCGAACAACAAATGGGTGTTTGACCAGACAAACATGGAGCAGATCAACAAACTCCTGACCGAGCAAGAGTTCGAAGCGTTTGGAACGAGAGAACGAGACCCGGACAAGTTTCATGTGAAGAATTGTCACGGCGCACGAAAGTTCATCTTCAAGCAGAGCGACGATGGTATTGAGAGGGCGAGAAAGAGGATTCGAGTGATTTACGTGCTCGATCGAGTGTTTAAGCTCGCGTTTTTCATCGGAGTCGTCTACTATTTGCTGTCACGCTTC
Protein: 488 (aa)
MQANRISDTFRGQCVFMTGATGFMGKVFLERLLRVTEVRKIFVLIRTKRGKNADDRLADIFKNPLFDKLKASRPLAQILERVQVVSGDCGFKRLNLSADDHAAITRSVSMIFHFAATVKFTEKFKRAIELNVRGTREMIQLALECEHLQVFCHISTAYSHLSEKVLLEKAYEPPADPHKMIEVAESFDEEKVEQLLSSYLCEHVPNSYVFTKALSEALVAKAHKQFNLPAIICRPAIILAAYKDPLPGWTDNLYNITGILSAGGLGILRSFCAKDDSKVNITCVDYTINNVMSSTWHYLHERMSSLYVVNLEYITLSLIGSFRKSIYVSRGEMPFDFVMWYPNVHFTESKFIHLSNVVLFQWIPSLLLDLLLMAFRRKPVLIKAQKKMFKELEVISVFANNKWVFDQTNMEQINKLLTEQEFEAFGTRERDPDKFHVKNCHGARKFIFKQSDDGIERARKRIRVIYVLDRVFKLAFFIGVVYYLLSRF
| Type | Start | End | Length |
| CDS |
695 |
752 |
58 |
| CDS |
808 |
941 |
134 |
| CDS |
1158 |
1707 |
550 |
| CDS |
2115 |
2277 |
163 |
| CDS |
2337 |
2450 |
114 |
| CDS |
2632 |
2751 |
120 |
| CDS |
3039 |
3290 |
252 |
| CDS |
3959 |
4031 |
73 |
| intron |
753 |
807 |
55 |
| intron |
942 |
1157 |
216 |
| intron |
1708 |
2114 |
407 |
| intron |
2278 |
2336 |
59 |
| intron |
2451 |
2631 |
181 |
| intron |
2752 |
3038 |
287 |
| intron |
3291 |
3958 |
668 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003399881 |
PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] |
1e-100 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
2.1e-07 |
| Pfam |
PF03015.14 |
Male sterility protein |
3.3e-14 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
0.017 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
4.2e-11 |
| Pfam |
PF03435.13 |
Saccharopine dehydrogenase |
0.088 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.0001 |
| Pfam |
PF07993.7 |
Male sterility protein |
4.8e-65 |
| Pfam |
PF00675.15 |
Insulinase (Peptidase family M16) |
0.073 |
| Pfam |
PF08659.5 |
KR domain |
0.024 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08062 |