MidgeBase gene description page [Pn.12452]
Outline
| Gene ID | Pn.12452 |
| Type | Protein coding gene |
| Scaffold | PnScaf16456 |
| Start | 504 |
| End | 2762 |
| Direction | + |
Sequence
Transcript: 1068 (bp)
ATGACTGGATGGTATTGCAAAGAACTTCCGTTGAGTTCTTCTCTATTATTTTCCAAATTCCGCAGACTCATGAGGGGCATGCCAAACACGTATGCCGTCAGCAAGCTGCTGACTGAGGAGCTCGTGCACCGCTTCAGTGACCGCATAAGCTTCGTGGTGACGCGCCCCGCGGTGGTCATTTCGGCGTGGCAAGAGCCCTTTCCCGGCTACGTCGACAACAAGAAGAACGGCATGATTGGGCCGATGATGGCGCGCGCGAGCGGCGCCCTCCGCACGATCCTCTCGAAGCCCGAAAAGCTCACCGAGTTCATTCCGGTCGACATCGCCACGCACGCGATTATCGCGATGACGTGCAAGCGCGGTCTGATGGCGGGCCGCGAAATTCTCTACTGCAACATCGTCGACACGAAAACACAGCCGTGGACGTTCGGACAGTACTTCGACCTCGAGATGGAGACCTTCTACAAGTACCCGCTGCGGAATCAGCTGTGGTGGCCGTACTGCGTCGTCACCGACAGCCGGCTCTACTACAACTTCAGACGCGTCTTCTACCACTACCTGCCCGCCGCCATCGGCGACTTCTTCACCGTTGTCTTCAGGCGAAAGCCACAGCTGATCCACTTTCAGAAGAAATTCGACCGCGGCATGCACACGTTGGGCTTCTACAACCTCCGCGAGTACACCTTTAGGAACGACCAGTTCATGAACTTGCCCAACGAGATGAGCGAGAAGGACCGCGAGGAGTTTTACTGCGACTTCAAAAGGCTAAACTTTGAAGAAGTTCTCCGCAATTATGTGCTAGGAACTCGCAAATTCATCCTGAAAATAAACGACGCCGACTCCTTGGAATTTCGAAGGGGCTTGTTGACGCTCTACTGGTATGTGGACCTCCTTACCCGTATCATCTTCTACGTCGTCGCCACCCTCATCGTTGGCCTCATCTTCTTCTACATTTTTGATCCTGCTGCATTCAACGACTTTTTCACAGATCTTTTCAACTCGTTCATGTTTTTAGTTAAAAATAACTTCATAATTAGAGGCGATGTCATTGAAAGGTGCAATCGAAGC
Protein: 356 (aa)
MTGWYCKELPLSSSLLFSKFRRLMRGMPNTYAVSKLLTEELVHRFSDRISFVVTRPAVVISAWQEPFPGYVDNKKNGMIGPMMARASGALRTILSKPEKLTEFIPVDIATHAIIAMTCKRGLMAGREILYCNIVDTKTQPWTFGQYFDLEMETFYKYPLRNQLWWPYCVVTDSRLYYNFRRVFYHYLPAAIGDFFTVVFRRKPQLIHFQKKFDRGMHTLGFYNLREYTFRNDQFMNLPNEMSEKDREEFYCDFKRLNFEEVLRNYVLGTRKFILKINDADSLEFRRGLLTLYWYVDLLTRIIFYVVATLIVGLIFFYIFDPAAFNDFFTDLFNSFMFLVKNNFIIRGDVIERCNRS
| Type | Start | End | Length |
| CDS |
504 |
533 |
30 |
| CDS |
1133 |
1713 |
581 |
| CDS |
1781 |
1934 |
154 |
| CDS |
2382 |
2488 |
107 |
| CDS |
2564 |
2759 |
196 |
| intron |
534 |
1132 |
599 |
| intron |
1714 |
1780 |
67 |
| intron |
1935 |
2381 |
447 |
| intron |
2489 |
2563 |
75 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658954 |
hypothetical protein AaeL_AAEL008125 [Aedes aegypti] gb|EAT40115.1| conserved hypothetical protein [Aedes aegypti] |
3e-49 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.012 |
| Pfam |
PF03015.14 |
Male sterility protein |
3.9e-22 |
| Pfam |
PF07993.7 |
Male sterility protein |
1.4e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07389 |