MidgeBase gene description page [Pn.12451]
Outline
| Gene ID | Pn.12451 |
| Type | Protein coding gene |
| Scaffold | PnScaf16446 |
| Start | 4865 |
| End | 9501 |
| Direction | + |
Sequence
Transcript: 1848 (bp)
ATGATCGCAATGGTGTTTGTTGCGAACAACTCGGCAGTGCAGAAGCGGCAGCTCTTGAAAGGCGTTTCGGGAATTTTCCGACATGGCGAGCTCTCGGTCATCATGGGACCATCGGGCGCAGGAAAAAGCAGTTTGCTTAACGCTCTCTCTGGGTACAGAACGGAGGGCGTGTCGGGAACGATTGTGCTGAACCGCAAGACGTCGTGCTACATCCAGCAGGAGGACCACCATCACACACTGATCACGGTGTACGAGATGATGATGATGGCGTGCCGGCTGAAGGTGAAGAACAGCTCAGCCGAGGACTACCGGCGTCGGATCAACGAGATTCTCACCGGCCTCAACCTCAGCCACCGCAAATCGTCGACGGCGAAGACGCTGAGCGGCGGCGAGAAGAAGCGGCTCTCGATCGCCCTCGAGCTCGTCACCAACCCGCAGGTGATGTTCCTCGATGAGCCGACGAGCGGCCTCGACGAGGTCACGGCGTCGGCGTGCATCCGGCTGCTGCGTGACCTCGCCCACCAGGACCGCACCATCATCTGCACCATCCACCAGCCGTCGGCCGTCATGTTCGAGCTCTTCGACAACATCTACTTGCTCGCGCAGGGACAGTGCGTGTATTCCGGCTCGCCCAAGGTCCTCATTCCCTTCCTCCTCCGCCAGAACTACACGTGCCCCAAATACAACAACCCGGCCGACTACAGTACGTTTTTACTCGTTTCTTCGTGCCGCCAATGGGAATGCTTGTGCATGCCCAAAGCATGCCGCTCCTTTGTCATCGAGCTGTGCGACCTCGAGCCGGACGTGGTGATCCCGCAGTTCGCGTCGCACTTCAACAACGGCAAGATGCAGTGCCTGCCGACGAACGCGCCGTCGGTGTGCGGCGGGGCGGCGATCTGCGAGTTCCAGATGAAGCACTCGATCAACACGCTGCAGATGGAGGTGGCGCGGCCGAAGGAGGGCACGATCGTGCAGAAGATGAAGCAGCTGTCGAAGTTCTTCAAGAGCGAGTACGCGCTGTCGAGTCTGCAGCAGTTCGCCGTGCTCTTCCACATGATGATGACGAAGATCTTGCGCAACAAGGTGGTGCTGTGGATCCAGTTCCTGCACCACCTCGGCTGCGGCTTCTTCATCGGACTGATCTTCCTCAACTCCGCCAACGACGGCCTCCGCATGTTCGACCACCTCAAGTTCTGCATGGGCTGCGTCTTCTTCGTCGTCTACACGCAGGTCATGGTGCCCATTCTCAGCTACCCTTCGGAGCTGCGGGTAGTCAAGAAGGAGTGCTTCAACCGATGGTACGGACTGACGCCCTACTACCTTGCTCTCACAATATCGCGGCTGCCTCTCCAAATCGTCTTCAACATCATTTTTTCGTCGCTCGTTTACTTCCTGAGCGGCTTGCCACTCGAGCCCTGGCGCTTCTTCCTGTTCGCCTTGATCGGCGTGATTGTGTCGGTTGTGGCCGAGGGCTTGGGGCTTGCCATCGGCGCCACCTTCAATGTCACGAACGGCTGCGCAGTGGGACCAGCACTGATGGCGCCCTTCCTGGGCCTCGCAATCTACGGCTTTGACTTTGCGGCGGACGTGCCGATTCTGATGTACGCGCTCATGAAGTTTTCGTTCATTCGTGGCGGCGTCGTTTCGCTGGTGCTCACCGTTTTCGGCTTCAATCGCGAGAAACTCCAGTGCGACGACGTCTACTGTCACTTCGACGACCCGAAGGTTCTGCTGCGGTATCTGCGCATCGAGAATGTGTCGCTCTTCACGGAGCTTTGCGTGCTCGTCGGCCTCATGATCGCCTTCCGTGCGCTTTTCTACATGAGCCTGCGAAAGCGCTTCTACAAG
Protein: 616 (aa)
MIAMVFVANNSAVQKRQLLKGVSGIFRHGELSVIMGPSGAGKSSLLNALSGYRTEGVSGTIVLNRKTSCYIQQEDHHHTLITVYEMMMMACRLKVKNSSAEDYRRRINEILTGLNLSHRKSSTAKTLSGGEKKRLSIALELVTNPQVMFLDEPTSGLDEVTASACIRLLRDLAHQDRTIICTIHQPSAVMFELFDNIYLLAQGQCVYSGSPKVLIPFLLRQNYTCPKYNNPADYSTFLLVSSCRQWECLCMPKACRSFVIELCDLEPDVVIPQFASHFNNGKMQCLPTNAPSVCGGAAICEFQMKHSINTLQMEVARPKEGTIVQKMKQLSKFFKSEYALSSLQQFAVLFHMMMTKILRNKVVLWIQFLHHLGCGFFIGLIFLNSANDGLRMFDHLKFCMGCVFFVVYTQVMVPILSYPSELRVVKKECFNRWYGLTPYYLALTISRLPLQIVFNIIFSSLVYFLSGLPLEPWRFFLFALIGVIVSVVAEGLGLAIGATFNVTNGCAVGPALMAPFLGLAIYGFDFAADVPILMYALMKFSFIRGGVVSLVLTVFGFNREKLQCDDVYCHFDDPKVLLRYLRIENVSLFTELCVLVGLMIAFRALFYMSLRKRFYK
| Type | Start | End | Length |
| CDS |
4865 |
4886 |
22 |
| CDS |
4989 |
5124 |
136 |
| CDS |
7340 |
7956 |
617 |
| CDS |
8016 |
8492 |
477 |
| CDS |
8682 |
8938 |
257 |
| CDS |
9160 |
9498 |
339 |
| intron |
4887 |
4988 |
102 |
| intron |
5125 |
7339 |
2215 |
| intron |
7957 |
8015 |
59 |
| intron |
8493 |
8681 |
189 |
| intron |
8939 |
9159 |
221 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849523 |
abc transporter [Culex quinquefasciatus] gb|EDS30432.1| abc transporter [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR020064 |
ABC transporter, G1-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR013525 |
ABC-2 type transporter |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13558.1 |
Putative exonuclease SbcCD, C subunit |
2e-05 |
| Pfam |
PF13207.1 |
AAA domain |
0.12 |
| Pfam |
PF13481.1 |
AAA domain |
0.00016 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.2 |
| Pfam |
PF01061.19 |
ABC-2 type transporter |
2.2e-18 |
| Pfam |
PF00350.18 |
Dynamin family |
0.00024 |
| Pfam |
PF13401.1 |
AAA domain |
0.002 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.0016 |
| Pfam |
PF13521.1 |
AAA domain |
0.036 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.0024 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.0026 |
| Pfam |
PF00005.22 |
ABC transporter |
1.2e-16 |
| Pfam |
PF13476.1 |
AAA domain |
0.0067 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
6.6e-06 |
| Pfam |
PF13304.1 |
AAA domain |
2.5e-09 |
| Pfam |
PF13175.1 |
AAA ATPase domain |
0.019 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.14661 |
| D. melanogaster |
FBgn0052091 |
| D. plexippus |
DPOGS207305PA |
| C. quinquefasciatus |
CPIJ007889 |
| P. humanus |
PHUM041800-PA |
| A. aegypti |
AAEL011863 |