MidgeBase gene description page [Pn.12439]
Outline
| Gene ID | Pn.12439 |
| Type | Protein coding gene |
| Scaffold | PnScaf16395 |
| Start | 3190 |
| End | 7119 |
| Direction | + |
Sequence
Transcript: 1950 (bp)
ATGCCAAAAAGTCAGTCACAAGACGGCAACTTCTTGTTCTTTCGCACAGTTGCAGGTGCCGAGCAGATTCACACGTCGCGGTTTTCGAAGGATGCGCGCGACGGAAAATTCATCAGCTACCTGAGCGAGGACTGTCAGACGCTCTACCAGACATTCAGACACGGCGCCTACGAGTCAAACAACGGCCAATGTCTCGGCTGGCGCGAGTCGCTTTCGTCTCCATATCAGTGGATCAACTACAACGAGGCGCTGCTGCGCGCGAAGAACTTCGGCTCGGGGCTGATCGGGCTGGGACTGGAGGCGGGTCCGAAGACCTTCATCTGCATCTACTCACAGAACCGTCCCGAGTGGGTGCTGTGCGAGCAGGGCTGCTACAACTACTCGCTCGTGCTGGTGCCGCTGTACGACACGCTCGGGCCCGACGCGTGCGCCTTCATCGTCAACCAGACCGAGTCGACGGTGGTGGTGGTCGAGGACGACAAGAAGGTCAATCTGCTGCTCGACAAGGCACCGCGCAACCTCAAGAAACTCATTGTGATCAAGCCGCTGCGTCCGGCGACGGCCCAGCGCGCCAAGAACCGCGGCATCGACATCCACACGTTCGACGAGGTGGAGAAGCTCGGCGCGTCCAAGAACTACCCCGAGGTGCCGCCACGGCCCTCCGACACGTGCACCATCTGCTACACCTCCGGCACCACCGGCAACCCCAAGGGCGTCATGCTCTCGCACAAGAACGTCCTCGCGTGCATCGTCTCCGTGTGCATGCAGCTCGGGGAGCACAAGCCGCGCCTGGGCGACGTGATGATCTCTTTTCTGCCGCTGGCGCACATGCTGGAGCGCGCTTGCGAGAACGCCATGTTCTATGCCGGCGGCTGCGTCGGCTACTACTCCGGCGACATCAAGGAACTGAACAATGACCTGAAGGCCTTAAAGCCGACCGTAATGCCAGCAGTGCCTCGCTTGCTAAACCGCGTCTACGACAAGATCCAGGGCGAGATCGCGAACTCGCCCATCAAGCGCATGCTCTTCCGCATGGCGATCAACTCGAAGGAGGCGGAGCTGAGACGCGGCATCATCCGCCGCAACAGCTTCTGGGACAAGCTCGTGTTCCGGAAGGTGCAGGAGGCGTTCGGCGGCCGCCTCCGGCTGATGGTCGTCGGATCGGCGCCTCTCGCCGGCAACGTCCTCACATTCACGCGTTGCGCTCTCGGGTGCATCGTGGTCGAGGGCTACGGCCAGACGGAGTGCGTCGCCGCCGTGACGCTCACCGTGCAGGGCGACTACATGGTCGAGCACGTCGGCCCGCCCATCGCCTGCGCCTGCCTCAAGCTGGTGGACGTGCCCGAGATGGAGTACTACGCGGCCAACCAGCAGGGCGAGGTGTGCATCAAAGGAACCTGTGTCTTTCAAGGATACTTCCGCGACCCAGACCGAACGGCGCAGACGATTGACGCGCAGGGATGGCATCACACGGGCGACATCGGCCAGTGGCTGAGCAACGGAACACTCAAGATCATCGACCGCAAGAAACATATCTTCAAGCTCAGCCAGGGCGAGTACATCGTGCCCGAGAAGATCGAGAACATCTACATCAACTCGCAGTACGTCGACCAGGTGTTTGTGCATGGCGAGAGCCTCAAGAGCTGCATAGTGGCAATTGTGGTGCCAAATGTTGAGACGGTGAAGGCGTGGGCGTCGGCCAACAACATCCCCGGCACACTGACCGTCCTTTGCAACAACGACGAGGTGAAGCACCTCATCATGAGCGACATGATCGCCCTCGGCAAGGACGCCGGCCTCAAGTCCTTCGAGCAGGTGAAGGACATCTACCTGCACCCGGACCCGTTCTCGGTGCAGAACCAGCTGTTGACGCCGACGTTCAAGTCGCGAAGGCCGCAGCTGCGCAGCTACTTCAAGCCGCAGCTCGACGACATGTACAAGATGCTTGAC
Protein: 650 (aa)
MPKSQSQDGNFLFFRTVAGAEQIHTSRFSKDARDGKFISYLSEDCQTLYQTFRHGAYESNNGQCLGWRESLSSPYQWINYNEALLRAKNFGSGLIGLGLEAGPKTFICIYSQNRPEWVLCEQGCYNYSLVLVPLYDTLGPDACAFIVNQTESTVVVVEDDKKVNLLLDKAPRNLKKLIVIKPLRPATAQRAKNRGIDIHTFDEVEKLGASKNYPEVPPRPSDTCTICYTSGTTGNPKGVMLSHKNVLACIVSVCMQLGEHKPRLGDVMISFLPLAHMLERACENAMFYAGGCVGYYSGDIKELNNDLKALKPTVMPAVPRLLNRVYDKIQGEIANSPIKRMLFRMAINSKEAELRRGIIRRNSFWDKLVFRKVQEAFGGRLRLMVVGSAPLAGNVLTFTRCALGCIVVEGYGQTECVAAVTLTVQGDYMVEHVGPPIACACLKLVDVPEMEYYAANQQGEVCIKGTCVFQGYFRDPDRTAQTIDAQGWHHTGDIGQWLSNGTLKIIDRKKHIFKLSQGEYIVPEKIENIYINSQYVDQVFVHGESLKSCIVAIVVPNVETVKAWASANNIPGTLTVLCNNDEVKHLIMSDMIALGKDAGLKSFEQVKDIYLHPDPFSVQNQLLTPTFKSRRPQLRSYFKPQLDDMYKMLD
| Type | Start | End | Length |
| CDS |
3190 |
3243 |
54 |
| CDS |
3389 |
3562 |
174 |
| CDS |
4123 |
4666 |
544 |
| CDS |
4723 |
4874 |
152 |
| CDS |
5403 |
5807 |
405 |
| CDS |
5875 |
5957 |
83 |
| CDS |
6033 |
6261 |
229 |
| CDS |
6741 |
6914 |
174 |
| CDS |
6982 |
7116 |
135 |
| intron |
3244 |
3388 |
145 |
| intron |
3563 |
4122 |
560 |
| intron |
4667 |
4722 |
56 |
| intron |
4875 |
5402 |
528 |
| intron |
5808 |
5874 |
67 |
| intron |
5958 |
6032 |
75 |
| intron |
6262 |
6740 |
479 |
| intron |
6915 |
6981 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862260 |
long-chain-fatty-acid coa ligase [Culex quinquefasciatus] gb|EDS36798.1| long-chain-fatty-acid coa ligase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR020845 |
AMP-binding, conserved site |
|
| InterPro |
IPR000873 |
AMP-dependent synthetase/ligase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00501.23 |
AMP-binding enzyme |
1.1e-111 |
| Pfam |
PF01248.21 |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
0.075 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000397507 |
| A. aegypti |
AAEL009232 |
| B. mori |
BGIBMGA008853-TA |
| H. sapiens |
ENSP00000426244 |
| H. sapiens |
ENSP00000348429 |
| H. sapiens |
ENSP00000422607 |
| C. quinquefasciatus |
CPIJ011600 |
| H. sapiens |
ENSP00000358418 |
| D. melanogaster |
FBgn0036821 |
| H. sapiens |
ENSP00000424935 |
| P. humanus |
PHUM190000-PA |
| A. mellifera |
GB11391-PA |
| H. sapiens |
ENSP00000442124 |
| N. vitripennis |
NV10903-PA |
| H. sapiens |
ENSP00000281455 |
| H. sapiens |
ENSP00000346223 |
| H. melpomene |
HMEL017892-PA |
| H. sapiens |
ENSP00000368542 |
| T. castaneum |
TC006471 |
| H. sapiens |
ENSP00000407165 |
| M. musculus |
ENSMUSG00000020333 |
| H. sapiens |
ENSP00000376796 |
| H. sapiens |
ENSP00000403647 |
| M. musculus |
ENSMUSG00000024981 |
| H. sapiens |
ENSP00000405687 |
| H. sapiens |
ENSP00000368574 |
| M. musculus |
ENSMUSG00000018796 |
| H. sapiens |
ENSP00000296869 |
| H. sapiens |
ENSP00000368546 |
| H. sapiens |
ENSP00000349608 |
| H. sapiens |
ENSP00000368557 |
| H. sapiens |
ENSP00000368548 |
| A. gambiae |
AGAP011603 |
| H. sapiens |
ENSP00000346680 |
| D. plexippus |
DPOGS208450PA |
| H. sapiens |
ENSP00000413329 |
| H. sapiens |
ENSP00000426150 |
| H. sapiens |
ENSP00000415140 |
| H. sapiens |
ENSP00000425006 |
| H. sapiens |
ENSP00000368551 |
| H. sapiens |
ENSP00000368566 |
| H. sapiens |
ENSP00000445154 |
| S. invicta |
SI2.2.0_01343 |
| H. sapiens |
ENSP00000425098 |
| P. vanderplanki |
Pv.09803 |