MidgeBase gene description page [Pn.12398]
Outline
| Gene ID | Pn.12398 |
| Type | Protein coding gene |
| Scaffold | PnScaf16279 |
| Start | 11903 |
| End | 13784 |
| Direction | + |
Sequence
Transcript: 1761 (bp)
ATGTTTAAAATACTAATTCTACAAGTCATCATTTTGATTGAATCATCCAAAAGCTACCAAATCAATGACAAATGGTTCTGTCGAAACGACATGGACTGCCTGCCATGGAGTCCAAAACTCAACACTGCACGCTCGGTAAAAATCTACGAGAGTCAGAACCTGTGCCGGCTCATGTGCGGAAAGTGCGGAGGTCTTTGGCCGCAAGTCAATGGACTGTGCAGTCTTCAAAAATCTGTCAATTTGATTAACACAAATTCAATATTTTTCGACTATCCCGACGGCGACGAGAGCGTCAGCGACTTTTTCCATCAAATACGAGCAATTTTTTTGGAAAATTTGAATCACGAGTGCGGTCGTGCTTGCAACAAACCGTCCGACTTGTCGCTCTATGTCAAAATGACCGTTGACGATGCGAGCCTCGCATTGAATTCATTGACTGACGAGTCTTATCAGTTAAACGTGACGACGAGTGACAATCAAGTGAGAGTGCTTATATCAGCGCCGACTGTTTTCGGCTCTCGACACGGTTTAGAGACCTTAAGCCAGTTAATGGTGAAAACGGTAGATAGCGACGAGAGAGTCGGCCTTCTCATGCTGTCGAATGCTGAAATATCTGATAAGCCCTTTTATCAGCATCGCGGTCTACTTATTGACTCGGCGCGTCATTTCATTCCCATTTCGTCTATTCTGCGCATTCTCGACGGCATGGCGGCCAACAAAATGAACGTCCTGCATTGGCACATCACTGACTCGCAGAGCTTTCCGATGGAGTCGAAGAGTCTTCCTCAAATGCACAAAACAGGCGCCTTCGCACACGATAAAGTGTACCGAGCGAGTGATATTGAGGCAGTTGTAGAGTATGCAAAGTACCGCAGCATTCGGGTAATCTTTGAACTCGATGCGCCAGCCCACGCCGGCCACGGTTGGGAGTGGGGAGAAGAGCACGGCCTGGGAAAACTGGCCGTGTGCGTTGACGATCAGCCGTGGAGGAAGTCTTGCATTCAGCCAAACTGCGGACAACTGAATCCCTCGAACGAGAACGTCTACTCGGTGTTGCGTGACATTTATCGAGACATTCGCGACTACATGCCGACGAACGACTTTTTCCATATGGGCGGCGATGAGGTCTTCATGCAATGCTGGAATAATACAAAGGAAATCACAGACTACATGACGAGGAGAAACTTTAATCGCGACACGCACGGATTCTTGCAGCTGTGGTCTGAATTTCAGGAGAAGGCTTTGCGCGCGTGGGACAATGTGACTGGCAGAAGTGACTCGGTCATACTGTGGTCGAGTGAAATGACATTGCCCGATAACATCGAGGAATTTCTGCCAAAAGACCGTTACATCATTCAAACGTGGATTCCCGATACATCGGACGTGCCGAAGAAACTGATCGAGAAAGGCTATCGCGTCATAATGTCGACGAAAAACGCATGGTACTTTGACCACGGCTTCTGGGGAAACACAAAGTATTACAATTGGAAGACAGTCTACGCAAACACGCTGCCCAAAAGTCGACTGGTTCTCGGCGGCGAGGTCTGCATGTGGTCAGAGTATGTTGACGAGCACTCCATCGAAGTCAAAATCTTCCCGCGACTGAATGCGGCTGCCGAGAGATTATGGGCGAACCCAGCTACTGACCTCAAGAGAGCGGAATCGCGATTCAACCGACAGCGGGAGAGAATTATTTCGAGGGGCATACAAACAGACTCCGTTCTGCCTGAATATTGCACGACGTTTGAAGGCGAGTGTCGT
Protein: 587 (aa)
MFKILILQVIILIESSKSYQINDKWFCRNDMDCLPWSPKLNTARSVKIYESQNLCRLMCGKCGGLWPQVNGLCSLQKSVNLINTNSIFFDYPDGDESVSDFFHQIRAIFLENLNHECGRACNKPSDLSLYVKMTVDDASLALNSLTDESYQLNVTTSDNQVRVLISAPTVFGSRHGLETLSQLMVKTVDSDERVGLLMLSNAEISDKPFYQHRGLLIDSARHFIPISSILRILDGMAANKMNVLHWHITDSQSFPMESKSLPQMHKTGAFAHDKVYRASDIEAVVEYAKYRSIRVIFELDAPAHAGHGWEWGEEHGLGKLAVCVDDQPWRKSCIQPNCGQLNPSNENVYSVLRDIYRDIRDYMPTNDFFHMGGDEVFMQCWNNTKEITDYMTRRNFNRDTHGFLQLWSEFQEKALRAWDNVTGRSDSVILWSSEMTLPDNIEEFLPKDRYIIQTWIPDTSDVPKKLIEKGYRVIMSTKNAWYFDHGFWGNTKYYNWKTVYANTLPKSRLVLGGEVCMWSEYVDEHSIEVKIFPRLNAAAERLWANPATDLKRAESRFNRQRERIISRGIQTDSVLPEYCTTFEGECR
| Type | Start | End | Length |
| CDS |
11903 |
11955 |
53 |
| CDS |
12074 |
13781 |
1708 |
| intron |
11956 |
12073 |
118 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001092298 |
beta-N-acetylglucosaminidase NAG2 precursor [Tribolium castaneum] gb|ABQ95983.1| beta-N-acetylglucosaminidase NAG2 [Tribolium castaneum] |
1e-167 |
| InterPro |
IPR015883 |
Glycoside hydrolase family 20, catalytic core |
|
| InterPro |
IPR025705 |
Beta-hexosaminidase subunit alpha/beta |
|
| InterPro |
IPR015882 |
Glycosyl hydrolase family 20, domain 2 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0004563 |
beta-N-acetylhexosaminidase activity |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00728.17 |
Glycosyl hydrolase family 20, catalytic domain |
2.1e-83 |
| Pfam |
PF02838.10 |
Glycosyl hydrolase family 20, domain 2 |
6e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC011540 |
| C. quinquefasciatus |
CPIJ801471 |
| P. humanus |
PHUM182340-PA |
| A. aegypti |
AAEL007839 |
| B. mori |
BGIBMGA011646-TA |
| D. melanogaster |
FBgn0041629 |
| D. plexippus |
DPOGS213576PA |
| H. melpomene |
HMEL004584-PA |
| N. vitripennis |
NV13911-PA |
| A. gambiae |
AGAP012453 |
| P. vanderplanki |
Pv.17515 |