MidgeBase gene description page [Pn.12367]
Outline
| Gene ID | Pn.12367 |
| Type | Protein coding gene |
| Scaffold | PnScaf16221 |
| Start | 1333 |
| End | 8095 |
| Direction | + |
Sequence
Transcript: 759 (bp)
ATGCGACGGGAGATCACAAGGTTAATGGGTGGATCAGCTGGCGGCTCAATGGGACATGCAATGTCGAACATGACTGGATTGGCGGCATGCAATGTGAGTGATACTAAACCGATGCAATTTCCACTTACGCAACGAAGAAAGCGACGAGTTCTATTCACACAAGCACAAGTTTATGAGCTAGAAAGGAGATTTAAACAGCAGAAATACTTATCCGCACCAGAACGTGAGCATCTCGCCAGCTTAATACATCTAACGCCTACACAAGTAAAAATTTGGTTTCAAAATCACCGCTACAAGTGCAAGCGACAGGCGAAGGAGAAGGCGATGGCCGAACAGAACCAACACAATCAATCGTCGAGCTCACCACGCAGAGTAGCCGTGCCGGTGCTGGTGAAGGACGGGAAGCCGTGCTCGGGCAGCTCGAATTCGACACCCGTTCAGCAGCAATTGACGTCGAGTGGCTCGACAATCGGCAACTCATCGTCCAACACGGTGAATCTCATCAACGTCGGCAGCGCGGGCGGCAGCGAGACGGCCACATCAAACAACCAGCACTCGCCCGTTGACTCGCCCTCGACGACCATCTTGAGCGGCTACAACGGCAGCGGAGGCCACCAGCAGATGCTGCAGCAGCCGTGCAACAACACGCTGATGTCGAACAGCCTCGCGATGGCGTACAGGAATCAAAACAACTTCATGGGCAACAGCCATCAGCAGCAGCATTGCGGCAGCTACTTGCCGCTTCAGACACGAGCCTGG
Protein: 253 (aa)
MRREITRLMGGSAGGSMGHAMSNMTGLAACNVSDTKPMQFPLTQRRKRRVLFTQAQVYELERRFKQQKYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQSSSSPRRVAVPVLVKDGKPCSGSSNSTPVQQQLTSSGSTIGNSSSNTVNLINVGSAGGSETATSNNQHSPVDSPSTTILSGYNGSGGHQQMLQQPCNNTLMSNSLAMAYRNQNNFMGNSHQQQHCGSYLPLQTRAW
| Type | Start | End | Length |
| CDS |
1333 |
1345 |
13 |
| CDS |
2758 |
2912 |
155 |
| CDS |
4440 |
4535 |
96 |
| CDS |
7310 |
7396 |
87 |
| CDS |
7685 |
8092 |
408 |
| intron |
1346 |
2757 |
1412 |
| intron |
2913 |
4439 |
1527 |
| intron |
4536 |
7309 |
2774 |
| intron |
7397 |
7684 |
288 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002086910 |
GE11056 [Drosophila yakuba] gb|EDX00263.1| GE11056 [Drosophila yakuba] |
2e-95 |
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR020479 |
Homeodomain, metazoa |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF00046.24 |
Homeobox domain |
3.4e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000761-TA |
| A. mellifera |
GB16784-PA |
| S. invicta |
SI2.2.0_00230 |
| M. musculus |
ENSMUSG00000054160 |
| H. sapiens |
ENSP00000429519 |
| A. aegypti |
AAEL003794 |
| B. mori |
BGIBMGA000762-TA |
| H. sapiens |
ENSP00000429607 |
| H. melpomene |
HMEL008187-PA |
| T. castaneum |
TC008996 |
| H. sapiens |
ENSP00000345147 |
| N. vitripennis |
NV18395-PA |
| C. quinquefasciatus |
CPIJ015118 |
| H. sapiens |
ENSP00000428341 |
| M. musculus |
ENSMUSG00000001496 |
| P. vanderplanki |
Pv.13030 |
| T. castaneum |
TC030597-GA |
| S. invicta |
SI2.2.0_08240 |
| D. melanogaster |
FBgn0028993 |
| A. gambiae |
AGAP013315 |
| P. humanus |
PHUM235910-PA |
| H. sapiens |
ENSP00000346879 |
| D. plexippus |
DPOGS212817PA |