MidgeBase gene description page [Pn.12364]
Outline
| Gene ID | Pn.12364 |
| Type | Protein coding gene |
| Scaffold | PnScaf16209 |
| Start | 6746 |
| End | 8239 |
| Direction | + |
Sequence
Transcript: 942 (bp)
ATGGAACTGCGCATGAGTTTGACGCTGATTTTTCTGCTGGTAGCACTTTCCTCAGCCGTCAAGCGGCTTCCGAAAGAGGAGGAGCTGAAAGTTCTGGAAAACTTCTACAAATCCCACAAAACAATTCGACAAAGGTCGAAGGCAGTTGTGGAGCAGGTGCTCAGGCGCTTCTACGAGGTGCAAGAGCACAACGAGCGCTTCAGGCAGGGCAGCGAACTTTTCGAGCAGGAACTCAACGAATTTGCCTGCTTGAGTGACGAGGAATTTTCTAGCACACGTCTCGGCTACAAACCACCGCAAAACGACACCGCACACAACGATATTCGCGTTCCGCTCGTGCGAGCTTCGCGCTCCTCGCTGCCGGTGTATTGGAACTGGGTGGACCATGGCTTTGTCGTGCAGCCGGTACAGAACCAAGGAAGCTGCGGGAGCTGCTACGCTTTTGCGGCTGCAGGCGCCATGGAGGGCTCGATGTGCCGCTATTTCGGACATTGCGTGAAGCTCTCTGAGCAGGAAATGATGGACTGCACGGCTGGCTGCAACGGCGGCTGGGACCACTGGGTCTACGAGTACACACGCGTCCATGGCGGCGCCACGCTGCGCGCCAACACCGGCTATGCCGCGGTGCGCAGGAAGTGCGATTCAGGCGCGAATCCAAGGCAGAAGCAATCGGTGGTGTTTCAGCATAAAGTACTGCCGAATGACGAGTTTACGATCCGGCACCACTTGTACCATTATGGACCGATGTTTGTCGCCTTTTACGTGCACAGCAACTTCAACTCTTACAGGCGCGGAATTATTGCGAGCGAGTCGGGGAAGGTACTCGGCGGTCATGCCGTGCTGCTCACCGGATATGGCGTGTCGGATGCCGGCGTTCCCTACTGGATTGCCAAAAACTCGTGGGGTAGTGAGTGGGGTGAGAAAGGGGGACCTCGATTTGCA
Protein: 314 (aa)
MELRMSLTLIFLLVALSSAVKRLPKEEELKVLENFYKSHKTIRQRSKAVVEQVLRRFYEVQEHNERFRQGSELFEQELNEFACLSDEEFSSTRLGYKPPQNDTAHNDIRVPLVRASRSSLPVYWNWVDHGFVVQPVQNQGSCGSCYAFAAAGAMEGSMCRYFGHCVKLSEQEMMDCTAGCNGGWDHWVYEYTRVHGGATLRANTGYAAVRRKCDSGANPRQKQSVVFQHKVLPNDEFTIRHHLYHYGPMFVAFYVHSNFNSYRRGIIASESGKVLGGHAVLLTGYGVSDAGVPYWIAKNSWGSEWGEKGGPRFA
| Type | Start | End | Length |
| CDS |
6746 |
7634 |
889 |
| CDS |
8121 |
8156 |
36 |
| CDS |
8220 |
8236 |
17 |
| intron |
7635 |
8120 |
486 |
| intron |
8157 |
8219 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAV84208 |
cathepsin L [Culicoides sonorensis] |
2e-37 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| InterPro |
IPR000169 |
Cysteine peptidase, cysteine active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.0013 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
0.00062 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
2.9e-49 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.12177 |