MidgeBase gene description page [Pn.12336]
Outline
| Gene ID | Pn.12336 |
| Type | Protein coding gene |
| Scaffold | PnScaf16129 |
| Start | 61602 |
| End | 67526 |
| Direction | + |
Sequence
Transcript: 3720 (bp)
ATGTGTAGACTAAACTTTAGGTCGATAGTTTTATTCTATCTCATACAGTCGACATTTATTTGTGCTGATGAGTCGAAAATTATCAAATATCCAACTGCTCAGCAATGGGCAGAGAAGTTTGGTGTAGATTTGTGGAGTTTAGGTGAATTTATAACGCGAAAGAACGATGTGGTTCAGAGCTTCAAGCAGGCACAAATAGAGAACAGATCGGGCTCGGCGATAGTCGAGGAGATTGCGAAGGAGATCAAGCTGATGATGGACGTTCGCATTAGCGCAATCAAACGCATCGTCGACACGGCTCAAGAGATCGGCTCAATATCGGCGAGCAATGATGAGGTGGTGGAGAAAAACTTCACCTACTACAATTCAAAGCTCATGATAGAGCCGAGCGAGGTGTCGATGACGGTATCGCCGATTGTGTCCGACGGGGAAGAGAATTTAGATAAAGTAGAAATACCAAAACCTGTGATGTATTTAACGGAAAGCGAAAAATTTAGCGACTATGTAAATTTATCATTAAGCTCCGTTCACGTCCCGACCAATGTCTACGACCGAGCGAAGAATGTCATCAAAGCCATCAAGTGGTCCGAGATGCTTGACAATATTTTCGATAATAACTACAAACACGACCCCTCTCTCTTTTGGCAGTACTTTTGCAGCTCGACGGGCTTCATGCGTCAGTTTCCCGCGACCAAGTGGAAATTCGATCCCGTCGATCTTTACGATTGCCGCATTCGGCATTGGTATATCGCGGCGGCCAATAGTCCCAAGGATATGATCATTTTAGTCGACAATTCTGGTTCGATGACGGGTCAAAAGAAGGACATCGCCAGACACATTGTTGAAAATATCCTGGACACACTGACGCCAAATGATTTCGTGAACATTTTCACATTCTCCGACGAGATTCGCGATGTCATTGACTGTTTTGGCAACACGCTGGTGCAGGCAAATTCTGCGAATATACGGGCCATGAAAGAGTCGTTGCTGCGTATCGAAACCAATGAGCTTGCAAATTTTTCTGCTGCATTGACGAGAGCCTTCGACGCACTTTCGGACTATCGGGACGCCGGTGCAAATTGCAATCAAGCAATTATGCTGGTGTCGGACGGACTTCCGATCACTGTCGATGACGTGTTCGAGCTCTATAATTGGCGCGAAAAACCGAACATTCCGGTGCGTGTTTTCACCTATCTGATTGGTCGCGAAGTGCCCGACACGAAAAACATAAAGGACATGGCGTGTAACAATCGCGGCTTCTATGTGCACATCAACACGCTGGCGGAGGTGCGCGAGCAAGTTCTCGAGTACATTCCCGTCATGGCACGTCCGCTGGTTCTCAATCGAACGCATCACCCCGTCATTTGGTCTCAAATTTACGCGGACGTGGTTGACACGCACTTGACGGACTATGAATGGGAGTGTCGTGAGCGGGCGAGCCAACGCGATCGCTTCATGACCTTTCGAAAGTTCTTGAACGAAGGCGTGAAAGTGAAATACGACAACCTTCCAGAGGACCCGTCAACTTTGAACTACGATTACATCGAGAGCGACGAGTCTGAGTTGACCAAGAAATTCAATTTCATGACGACCGTCTCGATTCCCATTTACGATAAGCGCGAAAACGCGACGAAAGTGGCGAATCTCCTCGGAGTTGCCGGCACCGACATCCCCATTAATGACATTAAGAAAATGATGCAACCGTTTCGGTTGGGAGTCGGAGCATACGCGTTTATCGTAGATAACAATGGCTTCATTCTTACGCATCCCGATTTCCGGCCAGTGTTCTACAAGGACATTCTGAAGCCAGCCTACAATTCAGTTGACATGATTGATGTTGAACTCATCGATGACGACCGAGAGCCGAGAGATTACGATCCGGATCTTCTTCACGTTCGCGAACAAATCATCAATCAGTCGACTGGAAGTCGGATACTGAACCAAAAGTTTCATTTCGATAGAATGAAAAGAGTGACTCGAGCGAAGCGAAACTTCTTCTGGAAGGGAATCGATGATACGCCATTCACATTGGTGATCACACTCCCCGAAGAATATGGAAAGTATCGCTTAGAAACACGTAGTGACGATGAGATTCATCGCGACACTGCCAAGGGCACAAACGTGCTCAACTTTTTTAATGGCTCCAACTGGAAAATCCATCCCGATTGGCTGTACTGTAAGCACAATAACGAGTCGTTCTCGTCGCCTGAGGCCGAGCTTATTTATTTTCTCGAGAGAATGAGACAGCCGGGATGGCATTGGCCTCTCATGAGGAGTCCACTGCCGCCAGAGCACATGAACACTCATACTAATAGTACGGCAGGAAGATTTCAATCCGATAGAGACTCTTACTATTGTGATAGAAAGCTTATGCAATCATTAGTATATGACGCGAAAGTTACAGAGTGGTTCAGTCGCAATACAAGCTTAGGACTCAACGACAATGGACCAATAGCACTCTTAATTGGTAAATTGCCAAGGAATGAGTTCAAGCAGAGATTTGGCGTTAGTGTCTCGTTTCTAGCCACCCATAGTGGCCTCCTGAGATGGCAAGACTACAACCAAATGGGTGAAGAAATTCGACCAGAGAATGAGTTTAGCGAAACGAACAAGAGGGCGATCGATGAAACCTGGTACAAGCGAGCGGTAGAGCAACACTTCATTGAGCCGAGCAGTTTTGTTTATTCGGTTCCATTTGATTCTCAAAATCGAAATGACACACTCGTTACAGCGACACATGCCATTTTTCATAGAGACAATGGCCGCTTCGCACCGGCAGCGGTCGTGGGATTTCAATTTCAACTAACCGCGATGCAAGCACTCTTCAAGAACATCACCAGCTCTTGCACTGAGCCGGCGTGTGCCTCGTGCGCGCACGAAGAATTCGAGTGCTTCTTGCTGGACGATAGCGGCTATGTGATTGTTTCGAACGATTTTGCCGAAACGGGGCGATTCTTTGGCGAGGTTAGCAAGAGCATTGCTGGCGGATCGGCGATGAGGATGATGATCGACGAGGGAATTTATCAGGCCGTCACTGTTTATGACTACCAAGCCATATGCTTTCAAAACAAGGACACGACAAGCCTCGCCAGTAAACTCATTACGCCATTCATTTACATTTGGAAGCTCTTTAAACTTATCGCAAGCCACATGATCTGGCTTTACGTTAGCATTTTCGTCGAAAATGTCAGCGCCTACTCGTACTCGTATGATGGAGCACAATACGACACAGACTATCCGCCCGATCCAACGGAGCGTCTCGAGCCGGCGTCAAAAAACAAGGAGCAAGAGTTTGACCCGCGGGTGCTCATCAAGCGAACGCGTCCCGAGCGATGCGATAAGATGTTCACCCTGTATCAGTTGCTGCGACCGAAGGAGAAGGAAAGATCAGCGTTCGATCTTCCGATGACGCCCTGCAGTCGGCCCTTCATAGCCATCCCCATTCCGAACAGCAACATGTTGCTCTTTGTCGCCGACACCGTGTGTTTCTCGAAGCTGGACAACTATCCGCTCTACAATCAGCCCATTGAAAAGGACTACAATGAGACGCTTCATTGTGCGAAGCTGCGACGGCCGACATACAGGCGACAATTGAGGCACTGCTTCAACAACAATACCAACGAGAAAGACATAGAGATTTGCGGAAAAGCTAACAAATCGGAGTTTAGTTTGTTCGCTCTGATGTTGGTCATAATTGTATCGATTAATAGTATCATGCAT
Protein: 1240 (aa)
MCRLNFRSIVLFYLIQSTFICADESKIIKYPTAQQWAEKFGVDLWSLGEFITRKNDVVQSFKQAQIENRSGSAIVEEIAKEIKLMMDVRISAIKRIVDTAQEIGSISASNDEVVEKNFTYYNSKLMIEPSEVSMTVSPIVSDGEENLDKVEIPKPVMYLTESEKFSDYVNLSLSSVHVPTNVYDRAKNVIKAIKWSEMLDNIFDNNYKHDPSLFWQYFCSSTGFMRQFPATKWKFDPVDLYDCRIRHWYIAAANSPKDMIILVDNSGSMTGQKKDIARHIVENILDTLTPNDFVNIFTFSDEIRDVIDCFGNTLVQANSANIRAMKESLLRIETNELANFSAALTRAFDALSDYRDAGANCNQAIMLVSDGLPITVDDVFELYNWREKPNIPVRVFTYLIGREVPDTKNIKDMACNNRGFYVHINTLAEVREQVLEYIPVMARPLVLNRTHHPVIWSQIYADVVDTHLTDYEWECRERASQRDRFMTFRKFLNEGVKVKYDNLPEDPSTLNYDYIESDESELTKKFNFMTTVSIPIYDKRENATKVANLLGVAGTDIPINDIKKMMQPFRLGVGAYAFIVDNNGFILTHPDFRPVFYKDILKPAYNSVDMIDVELIDDDREPRDYDPDLLHVREQIINQSTGSRILNQKFHFDRMKRVTRAKRNFFWKGIDDTPFTLVITLPEEYGKYRLETRSDDEIHRDTAKGTNVLNFFNGSNWKIHPDWLYCKHNNESFSSPEAELIYFLERMRQPGWHWPLMRSPLPPEHMNTHTNSTAGRFQSDRDSYYCDRKLMQSLVYDAKVTEWFSRNTSLGLNDNGPIALLIGKLPRNEFKQRFGVSVSFLATHSGLLRWQDYNQMGEEIRPENEFSETNKRAIDETWYKRAVEQHFIEPSSFVYSVPFDSQNRNDTLVTATHAIFHRDNGRFAPAAVVGFQFQLTAMQALFKNITSSCTEPACASCAHEEFECFLLDDSGYVIVSNDFAETGRFFGEVSKSIAGGSAMRMMIDEGIYQAVTVYDYQAICFQNKDTTSLASKLITPFIYIWKLFKLIASHMIWLYVSIFVENVSAYSYSYDGAQYDTDYPPDPTERLEPASKNKEQEFDPRVLIKRTRPERCDKMFTLYQLLRPKEKERSAFDLPMTPCSRPFIAIPIPNSNMLLFVADTVCFSKLDNYPLYNQPIEKDYNETLHCAKLRRPTYRRQLRHCFNNNTNEKDIEICGKANKSEFSLFALMLVIIVSINSIMH
| Type | Start | End | Length |
| CDS |
61602 |
61696 |
95 |
| CDS |
61773 |
61819 |
47 |
| CDS |
61882 |
63131 |
1250 |
| CDS |
63200 |
63436 |
237 |
| CDS |
64474 |
64554 |
81 |
| CDS |
64617 |
64691 |
75 |
| CDS |
64762 |
64941 |
180 |
| CDS |
65000 |
65202 |
203 |
| CDS |
65272 |
65411 |
140 |
| CDS |
65476 |
65614 |
139 |
| CDS |
65793 |
65825 |
33 |
| CDS |
66053 |
66160 |
108 |
| CDS |
66253 |
66769 |
517 |
| CDS |
66835 |
66946 |
112 |
| CDS |
67021 |
67523 |
503 |
| intron |
61697 |
61772 |
76 |
| intron |
61820 |
61881 |
62 |
| intron |
63132 |
63199 |
68 |
| intron |
63437 |
64473 |
1037 |
| intron |
64555 |
64616 |
62 |
| intron |
64692 |
64761 |
70 |
| intron |
64942 |
64999 |
58 |
| intron |
65203 |
65271 |
69 |
| intron |
65412 |
65475 |
64 |
| intron |
65615 |
65792 |
178 |
| intron |
65826 |
66052 |
227 |
| intron |
66161 |
66252 |
92 |
| intron |
66770 |
66834 |
65 |
| intron |
66947 |
67020 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847213 |
dihydropyridine-sensitive l-type calcium channel [Culex quinquefasciatus] gb|EDS45842.1| dihydropyridine-sensitive l-type calcium channel [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR004010 |
Cache domain |
|
| InterPro |
IPR013608 |
VWA N-terminal |
|
| InterPro |
IPR002035 |
von Willebrand factor, type A |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF05762.9 |
VWA domain containing CoxE-like protein |
0.016 |
| Pfam |
PF02743.13 |
Cache domain |
5.8e-20 |
| Pfam |
PF13519.1 |
von Willebrand factor type A domain |
1.3e-15 |
| Pfam |
PF13768.1 |
von Willebrand factor type A domain |
8.1e-12 |
| Pfam |
PF00092.23 |
von Willebrand factor type A domain |
4.9e-11 |
| Pfam |
PF08399.6 |
VWA N-terminal |
1.2e-37 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00571 |
| Pn.04849 |
| Pn.10502 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000372169 |
| N. vitripennis |
NV12768-PA |
| H. sapiens |
ENSP00000418228 |
| B. mori |
BGIBMGA003650-TA |
| N. vitripennis |
NV12767-PA |
| M. musculus |
ENSMUSG00000041460 |
| T. castaneum |
TC015119 |
| H. sapiens |
ENSP00000417318 |
| C. quinquefasciatus |
CPIJ005664 |
| H. sapiens |
ENSP00000467697 |
| P. vanderplanki |
Pv.00021 |
| B. mori |
BGIBMGA003640-TA |
| H. melpomene |
HMEL014118-PA |
| N. vitripennis |
NV12671-PA |
| D. melanogaster |
FBgn0028863 |
| D. melanogaster |
FBgn0261041 |
| A. aegypti |
AAEL009062 |
| H. sapiens |
ENSP00000465060 |
| H. sapiens |
ENSP00000288197 |
| H. sapiens |
ENSP00000403371 |
| H. sapiens |
ENSP00000443038 |
| H. sapiens |
ENSP00000468167 |
| P. vanderplanki |
Pv.02635 |
| A. gambiae |
AGAP009579 |
| C. quinquefasciatus |
CPIJ005979 |
| H. sapiens |
ENSP00000389506 |
| A. mellifera |
GB17590-PA |
| A. mellifera |
GB14353-PA |
| P. humanus |
PHUM308320-PA |
| P. humanus |
PHUM218030-PA |
| C. quinquefasciatus |
CPIJ001793 |
| S. invicta |
SI2.2.0_08974 |
| H. sapiens |
ENSP00000465372 |
| D. plexippus |
DPOGS215642PA |
| D. melanogaster |
FBgn0261999 |
| T. castaneum |
TC004591 |
| A. aegypti |
AAEL005392 |
| A. mellifera |
GB10696-PA |
| A. aegypti |
AAEL000121 |
| A. gambiae |
AGAP005490 |
| H. sapiens |
ENSP00000419101 |
| B. mori |
BGIBMGA003639-TA |
| P. vanderplanki |
Pv.00576 |
| T. castaneum |
TC001887 |
| A. aegypti |
AAEL011040 |
| P. vanderplanki |
Pv.09946 |
| D. plexippus |
DPOGS215762PA |
| H. sapiens |
ENSP00000468080 |
| M. musculus |
ENSMUSG00000021991 |
| H. sapiens |
ENSP00000468530 |
| A. gambiae |
AGAP009598 |
| H. melpomene |
HMEL014100-PA |
| H. sapiens |
ENSP00000446341 |
| T. castaneum |
TC008265 |
| H. sapiens |
ENSP00000417279 |
| P. humanus |
PHUM308330-PA |