MidgeBase gene description page [Pn.12303]
Outline
| Gene ID | Pn.12303 |
| Type | Protein coding gene |
| Scaffold | PnScaf16099 |
| Start | 12511 |
| End | 17041 |
| Direction | + |
Sequence
Transcript: 3570 (bp)
ATGCACCATGCCAGTCTGTGTCGAGGAATCGAGGAGGTCAAGTTCTCCTATCCGTTGAGTGAGGCTGTCGGAGATTTGATAATGAAGGTGTTTGCGACGGAAGATTTTCAAATTTTGCGTATCAACATGGCCGTTTCGAATGAGTCTTCGCTTGAGAATGCAGACGTTGGCAACGAGGTCACGAGGATCGCAACTAAAAAATTTAAAATCCACACCCGCGGCGTTTTGAGACAACAAATTCCTAAAGAACGGAGAATTTCGCCGATAATTTTGACTCTCGACTCTATCGCCACTTTTAATAGGATTAAATCGAGATTCGAGCATGATGTGCCCAAATTTTACCTCATTCTCCTCACAAAAGGAATCTTCAAAGAAATCAGGGAGATTTTAAACTTTTTCTGGACGATTTCGGTCGACGACGTCAACTTTTTGGTGACAGAAGAGTCGAAGGTGATAATGTACACATTTTATCCATTCGGTCATAAAAAATGCGGCACCGATTTGTCTCTCGTGCCAATCAACACATTCGACTTGCAAACAGCCACATGGAGCAGCGACATCTTCTACCCGAACAAGGTCGAAAATCTCCATCGCTGCCCGCTCAACGTCGGACTGCTCGAGAACGTTCCGTTTGTGATTATGCAGAACCGCACCACTGGCGTCGAGTACGACGGCATAGAGGTCACTTTGATCAAAGAAATGGCAAAGGCACTGAATTTTGTGGCCAACTTCTCAGCGCCTTTCGACAGCATCGGCTCGATCCGCGACAATGGAAGTTCGAGCGGAATGCTCGGCGCAGTCTACAAGCGACAGCAAGACGTCGCCATCAGCACGCTTTCGCTTCAAATTGAACGAGTAAAGTTCCTTACGCCAACCACTTCTTTCGCCACCGTCCCGCTTGTGATTGTCATGCCTCCGACTCCGCCTATTTCCCCGTTCGAGAAGCTCTATCTGCCCTTCGATCTCACCACCTGGAGTCTGCTTCTAGCGATGTTCATCATCGGATATTTCGTTATTATCATGACGAAGATTTTCTCAAGAACACTTTACAGCCTGATCGTGGGACGAAAGGTTCCATTTCCATTCACAAACATGCTGATTGCTTTCTTCGGATCAACACAAAAAACTCTGCCCAAAGCCAACTTCTCGAGATTTTTACTCGCAAAATTTTTAATTTTTTCGCTAGTGATGCGCAGCCTCTACCAAGGAAAGCTTTACGATATCATGCAGAAGGATATCATTGAAAAAATTCCCACAAAAATTGATGATTTGGTGGTGAAAAATTTCGTTTTCTACACTTACGAGAGTCTTAGTCGACGCGTTCAGGGACAGTCTTTTTCCGACAAAGTAAATAGCATCAAGAATTCAGAGCTAGAAGTCTATCGACGTAAGACAGTCGACTCCTCATTTAAAGGGGTCGTCTTTAGCTACGAGTACCAAGTCGTTTACCTCAACTTTCTCAACCGAAAAAGCTTCACTTACTTGATCCTCGACGAGAGATTTGTGACCAATCAGATGGTGTTTTATCTGCAGGAAAATCATTATCTTGCCGATGAAATGAACTCGATTATTATGTGGTTTCGTGACTTTGGCGTGTTGGACTACATAATCTCGAGATATGTCGACAATCTCTTCCTCAAAAGACTGCCATCGACGAAGGAAGCTGGCGCACTTAGTCTTAAAGAGTTGCTTGCCATTTTTGGCATCTGGCTAGCCGGTCTAGCCATGGCAGTTCTAGTGTGGATGGCCGAAGTAGGCATTGGTTTCAAGAAGAATTTCAGTCAAGTAGGAAGAGGCATCCAGGAGGTTAAATTTTCTTATCCGTTGAGCGAAGCTGCCGGTAATTTGATCACGAACGTCATTTCAACAGCAGACATTCAAATTTTAAGAATAAACATGGCAGTTTCCAACGAGTCCTCGCTCGAAAACGCAGACGTTGGTAACGAGGTATCAAAATTTGCGACCCAAAAATTCAAAATTCACACCCGCGGTGTGTTAAGGCAACAAATTCTGAAGGAACGGAGAATTTCGCCGATAATTTTGACTCTTGACTCTATCGCCACTTTTAACAGCGTCAAAGCGAGATTCGACCACGATGTTCCGAAATTCTACCTCATTCTCCTCACGAAAGGAATCTTCAAGGAAATCACCGAGGTCTTGAATTATTTTTGGAAAATTTCCGTTAGTGACGTCAACTTTCTAGTGACAAAGCAATCGACGGTGCTAATGTACACATTTTTTCCGTTCGCCCAAAATAAATGTGGAATCGACCTGTCACTGGTTCTGATCAACACATTTGACCTAAAGACAGCCGCATGGAGCAGTAAGTCCTTCTTTCCGAGCAAAGTCAACAATCTTTACCGGTGTCCGCTCAACGTTGGACTTCTGCAAAACGTGCCGTTCGTTATTATACGGAACAGCAGCAATACACTAGAGTATGACGGCATAGAGGTCACTTTAGTAAAGGAAATGGCCGAAGCGTTAAATTTTATTGCAAATTTTTCCAAGCCCTTCGACAGCATCGGTTCGATTCGCGACAACGGGAGCTCGAACGGAATGCTCGGCGCAGTCTACAAACGACAGCAAGACATCGCCATCAGCACGCTTTCACTACAAATCGACCGTGTGAAATTTCTCACGTCTACCACCTCTTTTGCCACCGTTCCAATTGTCATTGTCATGCCACCAACTCCGCTCATCTCGCCATTCAGGAAGCTCTACTTGCCCTTCGACCTCACCACCTGGAGCCTGCTTTTTATGATGTTTACAATCGGCTATGCCGTGATAATATTTTCGAAAATTTTCTCGAAAACTCTTTACCAGCTGATCGTGGGGAAAAAGGTCCAGTTTCCATTCACAAACATGCTCATCGCTTTCTTTGGCACTTCGCAGACTGTTCTTCCCAAAGCGAATTTTTCCAGGTTTTTGCTTGCGAAATTCCTGATCTTTTCACTGGTCATGCGTGGTCTTTATCAAGGAAAATTATTTGATATCATGCAAAAGGACATTCTCGAGAAAATCCCGACGAAAATTGACGATTTGATAGCTAAAAACTTCATTTTCTACACGTATGAGAGTCTGAGTAGGCGTGTTCAGGGACAGTCTTTTTCCCACAAAGTCGAGAGCATCAGGAATTCTGAGCTAGAGAAATATCGGAGAAAAACAGTCGACTCCTCATTTAAAGGGGTCGTCTTTAGCTACGAGTACCAAGTCGTTTATCTCAACTTTCTCAACCGAAAAAGCTTCACATACCTGATCCTCGACGAGAGATTTGTGACCAATCAGATGGTGTTCTACCTTCAAGAAAATCACTTTTTAGCCGACGAGATCAGCATGAGAATCGATTGGTTTCGTGACTTTGGCATTCTCGAGCACATCATTTCGAGATTCGTCGACAATCTTTTTCTCAAGAGACTGCCGTCCTCCAAGGAAGCGGAACCCATGAATTTTGAGGAGTTGTCGGCAATTTTTGGCGTTTGGTTTGCCGGACTAGTCCTTTCGACAGTGGTGTGGCTCGCAGAGGTAGGAATTGGCTGCAAAAAAACCTTGGCTGAAAAAAGAAGCTCGAAG
Protein: 1190 (aa)
MHHASLCRGIEEVKFSYPLSEAVGDLIMKVFATEDFQILRINMAVSNESSLENADVGNEVTRIATKKFKIHTRGVLRQQIPKERRISPIILTLDSIATFNRIKSRFEHDVPKFYLILLTKGIFKEIREILNFFWTISVDDVNFLVTEESKVIMYTFYPFGHKKCGTDLSLVPINTFDLQTATWSSDIFYPNKVENLHRCPLNVGLLENVPFVIMQNRTTGVEYDGIEVTLIKEMAKALNFVANFSAPFDSIGSIRDNGSSSGMLGAVYKRQQDVAISTLSLQIERVKFLTPTTSFATVPLVIVMPPTPPISPFEKLYLPFDLTTWSLLLAMFIIGYFVIIMTKIFSRTLYSLIVGRKVPFPFTNMLIAFFGSTQKTLPKANFSRFLLAKFLIFSLVMRSLYQGKLYDIMQKDIIEKIPTKIDDLVVKNFVFYTYESLSRRVQGQSFSDKVNSIKNSELEVYRRKTVDSSFKGVVFSYEYQVVYLNFLNRKSFTYLILDERFVTNQMVFYLQENHYLADEMNSIIMWFRDFGVLDYIISRYVDNLFLKRLPSTKEAGALSLKELLAIFGIWLAGLAMAVLVWMAEVGIGFKKNFSQVGRGIQEVKFSYPLSEAAGNLITNVISTADIQILRINMAVSNESSLENADVGNEVSKFATQKFKIHTRGVLRQQILKERRISPIILTLDSIATFNSVKARFDHDVPKFYLILLTKGIFKEITEVLNYFWKISVSDVNFLVTKQSTVLMYTFFPFAQNKCGIDLSLVLINTFDLKTAAWSSKSFFPSKVNNLYRCPLNVGLLQNVPFVIIRNSSNTLEYDGIEVTLVKEMAEALNFIANFSKPFDSIGSIRDNGSSNGMLGAVYKRQQDIAISTLSLQIDRVKFLTSTTSFATVPIVIVMPPTPLISPFRKLYLPFDLTTWSLLFMMFTIGYAVIIFSKIFSKTLYQLIVGKKVQFPFTNMLIAFFGTSQTVLPKANFSRFLLAKFLIFSLVMRGLYQGKLFDIMQKDILEKIPTKIDDLIAKNFIFYTYESLSRRVQGQSFSHKVESIRNSELEKYRRKTVDSSFKGVVFSYEYQVVYLNFLNRKSFTYLILDERFVTNQMVFYLQENHFLADEISMRIDWFRDFGILEHIISRFVDNLFLKRLPSSKEAEPMNFEELSAIFGVWFAGLVLSTVVWLAEVGIGCKKTLAEKRSSK
| Type | Start | End | Length |
| CDS |
12511 |
12532 |
22 |
| CDS |
12613 |
13936 |
1324 |
| CDS |
13990 |
14435 |
446 |
| CDS |
15159 |
16482 |
1324 |
| CDS |
16585 |
17038 |
454 |
| intron |
12533 |
12612 |
80 |
| intron |
13937 |
13989 |
53 |
| intron |
14436 |
15158 |
723 |
| intron |
16483 |
16584 |
102 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002071686 |
GK25012 [Drosophila willistoni] gb|EDW82672.1| GK25012 [Drosophila willistoni] |
7e-47 |
| InterPro |
IPR019594 |
Glutamate receptor, L-glutamate/glycine-binding |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
3.1e-17 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
1.2e-06 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
3.3e-10 |
| Pfam |
PF13596.1 |
PAS domain |
0.048 |
| Pfam |
PF13531.1 |
Bacterial extracellular solute-binding protein |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06793 |
| P. vanderplanki |
Pv.03034 |