MidgeBase gene description page [Pn.12295]
Outline
| Gene ID | Pn.12295 |
| Type | Protein coding gene |
| Scaffold | PnScaf16091 |
| Start | 95 |
| End | 953 |
| Direction | + |
Sequence
Transcript: 651 (bp)
ATGCAATCGTTGGTCAGTTTCCATATGCGGTTCAAGAGCAGAGTCTGTGGCGGTGTTTTCATTCAAAGACGTTGGGTCGTAACAACCGCTGATTGTCTCGTTGGTGGGACAATTCATGGAAACGTCTTTATGATTTTTAATGTAAATTTGGGTGCTTTAACCGTCCGATTTGATGCCTGTACGTTGCGAAGACATCCTGAATTCAACCCAGAAACGCTTGAGAATAACATTGCCATGGTGCTTCTATGTGGTTCGTTGGAAAATAACCCCAACTTCGAACCGATTCCGCTCTCAACTCAACACATTGGTGGAGGTGTGGACGCAGTGGTCACCGGCTGGGGATTCACAAGTTTTCCCGGCAGCAACGCACCAGTTCTTCAATTCTTGAATGTGACAACACTGACCAACTCTGACTGTCGCTCACGTCTTCCAGCAACCGACGCTGCTCGTGTGTTTGATGAGAACATTTGTGCCTTCACGCCGGGAGGTGGAATCTGTACTGGGGACTCAGGTGCTCCTTTGGTGAGCAATGGTGAAGCTATTGGAATTGCGTCTTGGAGCGTTCCGTGCGCTGCAGGCTACCCTGACGTCTATGTTCGTATTACCGACTATCACGCTTGGATAATGGAGATTCTTCGCCAAGGACCACGT
Protein: 217 (aa)
MQSLVSFHMRFKSRVCGGVFIQRRWVVTTADCLVGGTIHGNVFMIFNVNLGALTVRFDACTLRRHPEFNPETLENNIAMVLLCGSLENNPNFEPIPLSTQHIGGGVDAVVTGWGFTSFPGSNAPVLQFLNVTTLTNSDCRSRLPATDAARVFDENICAFTPGGGICTGDSGAPLVSNGEAIGIASWSVPCAAGYPDVYVRITDYHAWIMEILRQGPR
| Type | Start | End | Length |
| CDS |
95 |
129 |
35 |
| CDS |
203 |
255 |
53 |
| CDS |
325 |
745 |
421 |
| CDS |
809 |
950 |
142 |
| intron |
130 |
202 |
73 |
| intron |
256 |
324 |
69 |
| intron |
746 |
808 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF19792 |
serine-type enodpeptidase SP [Chironomus riparius] |
1e-40 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF05580.7 |
SpoIVB peptidase S55 |
0.16 |
| Pfam |
PF00089.21 |
Trypsin |
7.4e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes