MidgeBase gene description page [Pn.12281]
Outline
| Gene ID | Pn.12281 |
| Type | Protein coding gene |
| Scaffold | PnScaf16017 |
| Start | 54834 |
| End | 58618 |
| Direction | + |
Sequence
Transcript: 2970 (bp)
ATGTCAAGACATTCTATGAAGTCGCTATCGACAAATGACACGACGAGCATTGTCAGTGAAAGTCGCAGTGGTTCGAGCAGAAAGTCTATGATAATATATCTCGATGAAAATGGAAATCAATGCAAGGAACCGCGGGTTCGAAAAGTTGTGGGAACTCAGGCGCGACAAGTCACGGTGATTAACTATTCTCGACGTCATAGAGAATCTCACTCGAGAACGCAACATCATGTCACAACTGTAAGCTTTCCACAGCCTCGAATGGAACGCTCACTGTCAAGCGCGTACTCCTACTCGCCATATTCGATGAATTATCAGGGAAATGACGCACAAAGTCTACAGAGCAGCACACCGAGCTACATGCAGGCGGCATATTCGCCTCAATTCCAAAACATTTCGCCAAACTTCATCGTCTCATCGCCGCAGAATTTCAATCACATGACAAAGACGAACTCAATTAGATATGGATCGAATAGCGAGTTGAGCAAACGAACGCGCAATCAGGGCCACAGTGGCTATGAATTATCGCAAGACTTGATGGATAAGCAAATCGAGTTGCTGGAAAGAAAATATGGTGGCAAGATTCGAGCTCAACGCGCAGCATTGGTCATTCAGCGAGCATTTCGGCGCTATATGCTGAACAAGAAATTTGCATCGATTCGTGCAACGGCCAACGAGAAGACCGAGAAGCGAAGCTCAATTGCAAGCAGCAACGTGACCACGGCAGCGACTTCATCATTAAATCAGCGACTATCGCAGAGTCAATCGATGGAAATGTATGGGTTGAATTATCATCATCAGCATCATCCTCCGCCGAATAATGAAGCCGCCATGTTGCATGCGTCGAAAGAATCGCTGCGCTCGTCGGTGCTCTCGTCGCCCGTCAACGCCGCTCACTACGATCACCGCTCGCTAATGAGCCCCACTTCACCTCTCCGAAACTCTCTCATGATGAAATCCTCTCCACATCCATACGTTAACCTATTGCATCATCAGTACCACAACGCTAGCAGCATAAACAGCCCAACAAATCACCCGTCGCATCTGCAGTACCAGAACAGCAGCAACAACCTCAGCGGCAGTTCCTTGTCGTTTGGAAGCCCGATGATTCTCGACACAACGAACGGCAGCCAGAATCAGTCGTGGAACTCGCTGAACTCGAGCTCGGCCAGCCCGCTCGTCACTCACTACACGGCACAGCAGATTTATATGAGGCCGAAGAATTTGATTCAACAGCAGCTCTCGCCGCAGCCCGCGCACTCGTCGCCGTTGCTCTCGCACAAGAAGCCACCGCCGGAAGTTCCCAAGCGAATGACCAGCACCGTTTCTTCGTCAACGGGCTCGCTGAAGAAATCCAATGGCTTGTCACGATCAGCGAATAATGGAAGTCTGCAGTCGGTTCAGTCGTCGGGAAGCGAGAGTAGCGCATCATTGGAGAAAATGCATTATGAAAACTTAACAGAGCGCGGAACGTCTCCACTGTGGAAGCACAAAGATGACGATGACGATCAAAACTACAATCAGGCGCATCGCAAGAGCGCCGCCTCCGAGAATTTCAAATACTCCGAGGTCATAAGAAAGCGAAAATATCGTCTCGGCCTGAACCTTTTCAACAAGAAACCGGAGAAAGGAATCGAGTATTTGGTGAAGAACGGTTTCCTTGACAACACGCACTCGGGCGTTGCCAAGTTTTTGATCTCACGAAAAGGCTTGTCTCGTCAAATGATTGGCGAGTATTTGGGGATGATACAGAACTCCTTCAACATGGCCGTCCTCGATGCGTTCTGCGACGAGTTGGACCTGAGCGGAATGGCCGTGGACGTTGCACTGCGAAAGTTCCAAAGCTACTTCCGAATGCCGGGCGAGGCGCAGAAAATCGAGAGATTAATACAGGCGTTCAGTCAGCGCTATGCAAAATGTAATCCGGAAGTTGTGGGAAAGCTGCGCTCGTCAGAAACAATATTCATATTGGCTTTTGCAATTATAATGTTGAACACGGATTTACATACGCAAGCACTAAAGCCTGAGAAGAGAATGCGATGTGAAGATTTCATCAAAAATTTGCGCGGAGTAGACGACTGCTCCGACATCGATCGAGACATTCTTGTGGGAATCTACGAAAGAATAAAAGTGAACGAGTTCAAGCCAGCGTCCGATCATGTATCTCAAGTTATGAAGGTACAGGCAACAATCATCGGTAAAAAACCCAATTTGGCGTTGCCACATCGACGCTTGGTTTGCTATTGTCGGCTTTATGAGGTGCCGGATTTGAATCGAAAAGAACGACCTGGCGTTCACCAGCGCGAAGTGTTTTTGTTTAATGACATCTTGGTCATTACGAAAATTTTCAAAAAGATTTCAAAAACGTCGGTGACCTATTCATTCCGCACAAGCTACGCTCTGCCAGGAATGGTTGTTACGTTACTTAAGTCTTCGAATTATCCGCATGCAATTCAGCTGTCGAATCGAGTCGATAACAAGGTTCTTATAACGTTTAATGCACGAAACGAACACGACAGATGTAAATTTGCTCAAGACTTGGAGGAGAGCATAGCCGAAATGGATGAGATGGAACAGATCCGAATCGAGTCGGAGCTCGAGAAGCAGAAGAATTCGAGAAATTCCAGAAATATGAAGTCCACTTCGAGCGAGCATCGTGATAGCGGCTATGCCGAAATTAAACACAAGCACAAAAGCAAATCATCTCCGACTGCAAACAACTCCGCACAAAATAATAAGCATTTAAGCAACTCTCTGTTGAACATAAATGAACAGTTTAATGCTGGTGATAACAAATACGACAAAAATAGGCGTGCATCAGTATGCTCATTGGATAGCGGAACATCGCTCTCGTTCTTGTCCTCGAACGGAACGAGAGCCAGCGACAACAACAACAATGCCAACAGCAAGAGCATAGCGCAACAAATTATTTTAATGCCAAATTCGCCAATGGCAGCAAGATCAACAGAAGTC
Protein: 990 (aa)
MSRHSMKSLSTNDTTSIVSESRSGSSRKSMIIYLDENGNQCKEPRVRKVVGTQARQVTVINYSRRHRESHSRTQHHVTTVSFPQPRMERSLSSAYSYSPYSMNYQGNDAQSLQSSTPSYMQAAYSPQFQNISPNFIVSSPQNFNHMTKTNSIRYGSNSELSKRTRNQGHSGYELSQDLMDKQIELLERKYGGKIRAQRAALVIQRAFRRYMLNKKFASIRATANEKTEKRSSIASSNVTTAATSSLNQRLSQSQSMEMYGLNYHHQHHPPPNNEAAMLHASKESLRSSVLSSPVNAAHYDHRSLMSPTSPLRNSLMMKSSPHPYVNLLHHQYHNASSINSPTNHPSHLQYQNSSNNLSGSSLSFGSPMILDTTNGSQNQSWNSLNSSSASPLVTHYTAQQIYMRPKNLIQQQLSPQPAHSSPLLSHKKPPPEVPKRMTSTVSSSTGSLKKSNGLSRSANNGSLQSVQSSGSESSASLEKMHYENLTERGTSPLWKHKDDDDDQNYNQAHRKSAASENFKYSEVIRKRKYRLGLNLFNKKPEKGIEYLVKNGFLDNTHSGVAKFLISRKGLSRQMIGEYLGMIQNSFNMAVLDAFCDELDLSGMAVDVALRKFQSYFRMPGEAQKIERLIQAFSQRYAKCNPEVVGKLRSSETIFILAFAIIMLNTDLHTQALKPEKRMRCEDFIKNLRGVDDCSDIDRDILVGIYERIKVNEFKPASDHVSQVMKVQATIIGKKPNLALPHRRLVCYCRLYEVPDLNRKERPGVHQREVFLFNDILVITKIFKKISKTSVTYSFRTSYALPGMVVTLLKSSNYPHAIQLSNRVDNKVLITFNARNEHDRCKFAQDLEESIAEMDEMEQIRIESELEKQKNSRNSRNMKSTSSEHRDSGYAEIKHKHKSKSSPTANNSAQNNKHLSNSLLNINEQFNAGDNKYDKNRRASVCSLDSGTSLSFLSSNGTRASDNNNNANSKSIAQQIILMPNSPMAARSTEV
| Type | Start | End | Length |
| CDS |
54834 |
55075 |
242 |
| CDS |
55276 |
55636 |
361 |
| CDS |
55738 |
56506 |
769 |
| CDS |
56583 |
57166 |
584 |
| CDS |
57275 |
57484 |
210 |
| CDS |
57607 |
57696 |
90 |
| CDS |
57766 |
57943 |
178 |
| CDS |
58012 |
58350 |
339 |
| CDS |
58419 |
58615 |
197 |
| intron |
55076 |
55275 |
200 |
| intron |
55637 |
55737 |
101 |
| intron |
56507 |
56582 |
76 |
| intron |
57167 |
57274 |
108 |
| intron |
57485 |
57606 |
122 |
| intron |
57697 |
57765 |
69 |
| intron |
57944 |
58011 |
68 |
| intron |
58351 |
58418 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFZ16254 |
hypothetical protein SINV_01044 [Solenopsis invicta] |
0.0 |
| InterPro |
IPR023394 |
SEC7-like, alpha orthogonal bundle |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR000904 |
SEC7-like |
|
| InterPro |
IPR000048 |
IQ motif, EF-hand binding site |
|
| Gene Ontology(BP) |
GO:0032012 |
regulation of ARF protein signal transduction |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005086 |
ARF guanyl-nucleotide exchange factor activity |
|
| Pfam |
PF00612.22 |
IQ calmodulin-binding motif |
0.023 |
| Pfam |
PF01369.15 |
Sec7 domain |
6.9e-59 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14817-PA |
| H. sapiens |
ENSP00000461496 |
| H. sapiens |
ENSP00000437554 |
| D. melanogaster |
FBgn0026179 |
| H. melpomene |
HMEL016325-PA |
| N. vitripennis |
NV12173-PA |
| H. sapiens |
ENSP00000461043 |
| H. sapiens |
ENSP00000372292 |
| H. sapiens |
ENSP00000397811 |
| P. humanus |
PHUM029790-PA |
| T. castaneum |
TC005167 |
| H. sapiens |
ENSP00000456180 |
| H. sapiens |
ENSP00000456630 |
| H. sapiens |
ENSP00000364517 |
| H. sapiens |
ENSP00000273221 |
| P. vanderplanki |
Pv.08481 |
| A. aegypti |
AAEL000906 |
| S. invicta |
SI2.2.0_01044 |
| M. musculus |
ENSMUSG00000041115 |
| H. sapiens |
ENSP00000315662 |
| H. sapiens |
ENSP00000379712 |
| P. vanderplanki |
Pv.12970 |
| C. quinquefasciatus |
CPIJ002812 |
| H. sapiens |
ENSP00000402299 |
| A. gambiae |
AGAP011421 |
| B. mori |
BGIBMGA004600-TA |
| H. sapiens |
ENSP00000364514 |
| D. plexippus |
DPOGS216191PA |