MidgeBase gene description page [Pn.12213]
Outline
| Gene ID | Pn.12213 |
| Type | Protein coding gene |
| Scaffold | PnScaf15869 |
| Start | 39704 |
| End | 41408 |
| Direction | - |
Sequence
Transcript: 1110 (bp)
ATGATTGTTTGTGAGCACAAATACAACTGCGAATCGAACAGCATTTGCGATAAACTAATGCAGCCATGGTGGTGTTGGCTCGTCTCAAAAACTCCTATCTTTGTCGCTCCGAACCTTCTGACCATCGTCGGACTCCTCGTCAACATCATCACCTCATTGTTATTGCTATATCATGCACCTGACGGTAAAGCTGATGCGCCCAGATGGTGCTATTTGTTCTGCGCGGTCGGGCTTTTCATTTATCAAAGCCTCGACGCTATCGATGGAAAACAAGCTAGACGCACAAACACTTCCTCGCCGTTGGGCGAACTCTTTGATCATGGATGTGACTCGATCTCAACAGTTTTCGTAAGCATTGCTGCCTGTTGCGCAGGAGGTCTTGGTCATCACCCGACTGCAATGTTGCTTAATTGCGCGACAGCAATTATTCTATTTTATGTAGCTCACTGGCAGACCTACATAACCGGAGTCTTGCGATTTGGAAAATTTGACGTCACGGAAGCACAACTCTGCATAATGGCAATACATTTAGTATCGTTCTTCTTCGGACCTCAAGCGTGGCACGTACAAATTTTGGGAGTTCAAGTCTGGTTCATCATGGCTTCATTTTCTCTATCAACCGCCTTATTGGTGCTGATCAATTTCGCACAAACCATAAGAAAAGGAGGCATCGGGAAGAACGGGTCGACTGTGGCAGGCACAAGTATAATATCGCCAATTCTTCCATTTCTACTCGTCGTCATACCGGCATTTATCATATCGGAAAAGTCACGCAGCCAAGTGTACTTGAATCATCCAGTACTGTATTTATTGACATTTGGGATTCTGGCTGCGAAGGTATCGTGTCGCTTGGTCGTTGCGCACATGAGCAAATCCGAGATGAATTTGCTCGACTCGGGTCTTTTTGGCCCGCTCATTCTCTTCCTCAATCAATATTTCAATGAATTTTTCAACGAATATTTCGTTTTGTGGCTAGCATTTTTGTGGTGCACGTACGATTTAATTGGCTACTGCAGCACAGTATGTCTCGAAATGGTGTCCTATCTCAACATTCATCTCTTCAAAATTCCCTACCCGCCAAAAAGTAACAAAGTTGCAAACTCTAGAAAA
Protein: 370 (aa)
MIVCEHKYNCESNSICDKLMQPWWCWLVSKTPIFVAPNLLTIVGLLVNIITSLLLLYHAPDGKADAPRWCYLFCAVGLFIYQSLDAIDGKQARRTNTSSPLGELFDHGCDSISTVFVSIAACCAGGLGHHPTAMLLNCATAIILFYVAHWQTYITGVLRFGKFDVTEAQLCIMAIHLVSFFFGPQAWHVQILGVQVWFIMASFSLSTALLVLINFAQTIRKGGIGKNGSTVAGTSIISPILPFLLVVIPAFIISEKSRSQVYLNHPVLYLLTFGILAAKVSCRLVVAHMSKSEMNLLDSGLFGPLILFLNQYFNEFFNEYFVLWLAFLWCTYDLIGYCSTVCLEMVSYLNIHLFKIPYPPKSNKVANSRK
| Type | Start | End | Length |
| CDS |
39707 |
40355 |
649 |
| CDS |
40465 |
40549 |
85 |
| CDS |
40610 |
40662 |
53 |
| CDS |
40724 |
40784 |
61 |
| CDS |
40860 |
41110 |
251 |
| CDS |
41398 |
41408 |
11 |
| intron |
40356 |
40464 |
109 |
| intron |
40550 |
40609 |
60 |
| intron |
40663 |
40723 |
61 |
| intron |
40785 |
40859 |
75 |
| intron |
41111 |
41397 |
287 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_552478 |
AGAP011766-PA [Anopheles gambiae str. PEST] gb|EAL38873.2| AGAP011766-PA [Anopheles gambiae str. PEST] |
1e-128 |
| InterPro |
IPR014472 |
Choline/ethanolamine phosphotransferase |
|
| InterPro |
IPR000462 |
CDP-alcohol phosphatidyltransferase |
|
| Gene Ontology(BP) |
GO:0008654 |
phospholipid biosynthetic process |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0016780 |
phosphotransferase activity, for other substituted phosphate groups |
|
| Pfam |
PF01066.16 |
CDP-alcohol phosphatidyltransferase |
1.3e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000441980 |
| H. sapiens |
ENSP00000446994 |
| N. vitripennis |
NV16274-PA |
| P. vanderplanki |
Pv.03072 |
| A. mellifera |
GB10071-PA |
| A. aegypti |
AAEL014395 |
| C. quinquefasciatus |
CPIJ000800 |
| C. quinquefasciatus |
CPIJ000801 |
| H. sapiens |
ENSP00000229266 |
| D. plexippus |
DPOGS215958PA |
| A. gambiae |
AGAP011766 |
| H. melpomene |
HMEL016451-PB |
| A. aegypti |
AAEL011841 |
| D. melanogaster |
FBgn0033844 |
| H. sapiens |
ENSP00000448766 |
| H. sapiens |
ENSP00000349696 |
| B. mori |
BGIBMGA001073-TA |
| T. castaneum |
TC008273 |
| H. melpomene |
HMEL016451-PA |
| M. musculus |
ENSMUSG00000060002 |
| P. vanderplanki |
Pv.03578 |
| S. invicta |
SI2.2.0_10587 |
| P. humanus |
PHUM503300-PA |