MidgeBase gene description page [Pn.12183]
Outline
| Gene ID | Pn.12183 |
| Type | Protein coding gene |
| Scaffold | PnScaf15721 |
| Start | 12177 |
| End | 12891 |
| Direction | - |
Sequence
Transcript: 630 (bp)
ATGTGTGATTTGTATTACACGCCGGCGTCTGGCCCGTGCCGGCTCGTTCAGATGGTGGCGTTTGCGCTGAAGGTCAAGCTCAAGCTACACCCGCTCAATCTACAGCAGAAGGACCACCTTGCGCCCGAATTCCTCAAGCTCAATCCGCAGCACATGGTGCCAACGCTCGTCGACAATAATTTTGCACTTTGGGAGTCGCGGCCTATCGCTATCTACTTGGTCGAAAAGTACGCGAAAGATGACTCACTCTACCCCAAAAATCCGAAACAGCGCGCCGTTGTGAATCAGCAACTTTACTTCGACATGGCGACGCTCTCGAAGCGCCTCTATGACTTCTTCTTCCCGCAACTGATGAACGGCGCCGAGCCCGATCTGGAGAAATTCGGCGAGCTCGAGGAGGCCCTCGGATTCTTCGAGAAAAGCCTCGAACGCTCGACTTATGCTGCCGGCGAGAAGCTGACAGTCGCGGACTTTGCACTCGCGGTGACTGCCAGCATGTTCGAGCTCACCGGCTACGATCTCAGCCCCTACCCGAAAGTAACCCGCTGGTACAAACTGATGAAGGAAACGCTACCCGGCTGGCAGATCAACGAGGAGGGCCTCAGTGTGATGCGACAATACTTTAAGAAG
Protein: 210 (aa)
MCDLYYTPASGPCRLVQMVAFALKVKLKLHPLNLQQKDHLAPEFLKLNPQHMVPTLVDNNFALWESRPIAIYLVEKYAKDDSLYPKNPKQRAVVNQQLYFDMATLSKRLYDFFFPQLMNGAEPDLEKFGELEEALGFFEKSLERSTYAAGEKLTVADFALAVTASMFELTGYDLSPYPKVTRWYKLMKETLPGWQINEEGLSVMRQYFKK
| Type | Start | End | Length |
| CDS |
12180 |
12784 |
605 |
| CDS |
12867 |
12891 |
25 |
| intron |
12785 |
12866 |
82 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAB94639 |
glutathione S transferase-1 [Culicoides variipennis] |
7e-62 |
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
1.4e-08 |
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
4.9e-06 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
2.1e-10 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
2.3e-12 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
2.5e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10073 |