MidgeBase gene description page [Pn.12180]
Outline
| Gene ID | Pn.12180 |
| Type | Protein coding gene |
| Scaffold | PnScaf15721 |
| Start | 4894 |
| End | 7298 |
| Direction | - |
Sequence
Transcript: 1887 (bp)
ATGTTGAAAATTCTGTCAATTTTGCTGTTGGTCACCACAATTCGGTGCGAGCTGGAGGACTTTCCGATGCCGAGCTACAGCATAGCAGTTTCGAAAGTCCTCACCGACTACATCCTGAACTTCTTCATCGAACGGACAAACACAATCAACATCTATGAAGTTTCCTTGGAAAACAACACGAGCGCGAACTTCGACATCATCAACGAAGTCCTCTACAGCGTGAAAACAAAGGCGGTCGTTCAGGTCGACAGCCTGACCGACTCGCAAGTGACAATTGCACGGCATTTTGTGAACATTTTCTGCGTGGACTCGTTCGCGTCTTTCGAGGTCATTTACCGGCAAATTCTGCACGAGCACTTTGAGTTCCAGGGCTTTTTCCTGGTTGTCATGACCACCCACATGGACGACATCTACACGACCATGATGCAGATTTTCGGTGCCCTTTGGTCGAAGCACATCATCAACATCAACGTCGTTTTCATGCCGCCCGAAAACACAAACGAGGCGCACGTTTACACCTTCTTTCCCTACTCGCAATTCTACTGCGAAAAAGTCACTCCCGTGCATCTCAACCACTACCGCGACCGCCGGTGGATCAACCGAATCGACTACTTTCCGCGCAAGCTGCAGAACTTTCATGGCTGCCCGCTAAAGGTCGCCACATTCAGCAATCCTCCCTTCATGATCATCAACCGAGATAAGCGCACCGGCGCAGTTTCTGTCAACGGCCTTGACGGCGACATGATTCGCGTTCTCGCGCAACGCTTCAACTTTAACGTGCAGCTCTATCTGCCGCCCAATCTGTGGGGCGATATCTACGACAATGGCACGCTGACGGGCGCAATTAAAATGGTCGTTAACGAGGAGGTAAATATGACGCTCGGCTTCTTTGCCACAAGCCCCGAGCGTGATCACTACATGAAATCGGGCTACGTCTACTACACGACCAATCTTGTGTGGATGGTGCCACCAGGGAAGCCGCTTTCAGCCCTTCAGAAGCTCCTCAATCCGCTCGGCACCGAGCTCTGGATCTTCACGTTCGTGACGATACTGATTGGTTTTGGCGCAATTGCGGTACTGAAGCTGCAAAATCCGGTGATTCAAGATTTTGTTTTCGGCAACGGCATACAGAGTCCGGCTATGAACTTCATCAATCTGATTTTGGGCAATTCACTCTTTCGGCTTCCGCAGAGGAATTTTGCCCGCTTTCTCATCCTCATTTTCCTCGTTTACTCTTTCATCTTGAGGAGCTGCTACACCGGTGGTCTCGTGAAGTTTATGCAGATGGACACGCGCGGAAAACGCATGCAAACTACCGCTGAAATGTTGGACGCCAATTTCACCTTTCACATGCTCTACGCGGCGCGCTCCTATCTCATCGAAATGCCGCACGTGCTCAAGCAGTCGAAGCTGCTAAGCGTCGACGAGTACGCGGAAAAGCTGAAGCAAATGACGGTCGATCCGTACTTCAAGGGCGCCTTCATCACGTCGATCGCACACCTCGCCTATCGCAACTACATGGTCTTTCCCCAGCGTTATCATCACCACGCACCAGAAGCCCTCTACACGCTCAACATCGCGATCTACATGCACAAAGAATCGTGTCTCTCGGTTCCATTCGACAACGCCATCCGAAATCTGGTCAATGGCGGCTTGGTCACGAATTGGGCGTCAAAGTTCATCGACATGCAGTACTTGAAGCAAATTGTTGACGAAAATCCAAAGGCACTAAGCGTTACTCAGCTGCAGGGATGTTTTGAGCTCCTCATTGGAGGATTGTCGTTAGGCGTTGTCGCCTTTGTCGCTGAAATTTTTGTGCGCAATCGATTCACCCTCGAAATGGTGCGGCGGTTTAAGAAAACAAAAACCAAGCGAGTGACTTTTAAA
Protein: 629 (aa)
MLKILSILLLVTTIRCELEDFPMPSYSIAVSKVLTDYILNFFIERTNTINIYEVSLENNTSANFDIINEVLYSVKTKAVVQVDSLTDSQVTIARHFVNIFCVDSFASFEVIYRQILHEHFEFQGFFLVVMTTHMDDIYTTMMQIFGALWSKHIININVVFMPPENTNEAHVYTFFPYSQFYCEKVTPVHLNHYRDRRWINRIDYFPRKLQNFHGCPLKVATFSNPPFMIINRDKRTGAVSVNGLDGDMIRVLAQRFNFNVQLYLPPNLWGDIYDNGTLTGAIKMVVNEEVNMTLGFFATSPERDHYMKSGYVYYTTNLVWMVPPGKPLSALQKLLNPLGTELWIFTFVTILIGFGAIAVLKLQNPVIQDFVFGNGIQSPAMNFINLILGNSLFRLPQRNFARFLILIFLVYSFILRSCYTGGLVKFMQMDTRGKRMQTTAEMLDANFTFHMLYAARSYLIEMPHVLKQSKLLSVDEYAEKLKQMTVDPYFKGAFITSIAHLAYRNYMVFPQRYHHHAPEALYTLNIAIYMHKESCLSVPFDNAIRNLVNGGLVTNWASKFIDMQYLKQIVDENPKALSVTQLQGCFELLIGGLSLGVVAFVAEIFVRNRFTLEMVRRFKKTKTKRVTFK
| Type | Start | End | Length |
| CDS |
4897 |
5250 |
354 |
| CDS |
5615 |
6280 |
666 |
| CDS |
6432 |
7298 |
867 |
| intron |
5251 |
5614 |
364 |
| intron |
6281 |
6431 |
151 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
2e-76 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| InterPro |
IPR019594 |
Glutamate receptor, L-glutamate/glycine-binding |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.3e-11 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
0.11 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
0.00057 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS203871PA |
| A. aegypti |
AAEL003328 |
| A. gambiae |
AGAP013172 |
| A. aegypti |
AAEL014691 |
| A. aegypti |
AAEL003340 |
| B. mori |
BGIBMGA012493-TA |
| A. aegypti |
AAEL014687 |
| C. quinquefasciatus |
CPIJ014667 |
| D. melanogaster |
FBgn0029966 |
| P. vanderplanki |
Pv.03498 |
| A. aegypti |
AAEL014686 |
| A. aegypti |
AAEL003335 |