MidgeBase gene description page [Pn.12108]
Outline
| Gene ID | Pn.12108 |
| Type | Protein coding gene |
| Scaffold | PnScaf15495 |
| Start | 9678 |
| End | 10402 |
| Direction | + |
Sequence
Transcript: 654 (bp)
ATGAACAGGATAATTAATGAAATTTCAACAGTTTTGCGCCAGTTTGAGCAATTATTTCCTGTAATCTTTGGACGATTTCCCTATCCACCAGAACCGTGCACAATATTAGCGACGCACTCAAATTCAATTTCGACCAATTACAATGCAAAACAGCCTTTTACACTCAAAGATCTAATTGGGGATGGCTTTCTTTTTGCGGTACCCACGTTCCGGAGAACTCTTGAAGTGAGGAAAACGAGAAAAATTGGAGTTCCCTATCGAGGCGGACCGGAAGGATTAAAAACACTTCGATATAAGCCATTTATTGAAGTTTGTGATACGTGTGGACACTATCATGAGAAGAAATGTCTCTGTCCAAACTGCTACGAACGAGTGCGTAACGAAACAAAGGAGATTCAAGAGAAAATAATTAAAAAACTAAAACTGGACCCGATTGACAAAGATGTGGTTGTACTCTATGACGGAGAAAAATCACAAGAACAACTTTCATCCATGGAATTTTGGAATGGCAAGAGAATAATTGAAATGGAAAAGCCGCGACCACAATGGTTCAGTAAAAATTTGCTGCAAAAGACAACGCAACCAAACGCCACTACAAAAGAAGTTGAGGAAGTAGTTGGTCCAACTGTTCATGTAAAACCATCGAATCTTGGA
Protein: 218 (aa)
MNRIINEISTVLRQFEQLFPVIFGRFPYPPEPCTILATHSNSISTNYNAKQPFTLKDLIGDGFLFAVPTFRRTLEVRKTRKIGVPYRGGPEGLKTLRYKPFIEVCDTCGHYHEKKCLCPNCYERVRNETKEIQEKIIKKLKLDPIDKDVVVLYDGEKSQEQLSSMEFWNGKRIIEMEKPRPQWFSKNLLQKTTQPNATTKEVEEVVGPTVHVKPSNLG
| Type | Start | End | Length |
| CDS |
9678 |
9768 |
91 |
| CDS |
9837 |
10399 |
563 |
| intron |
9769 |
9836 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_311295 |
AGAP000759-PA [Anopheles gambiae str. PEST] gb|EAA06874.4| AGAP000759-PA [Anopheles gambiae str. PEST] |
4e-43 |
| Pfam |
PF06827.9 |
Zinc finger found in FPG and IleRS |
0.35 |
| Pfam |
PF01783.18 |
Ribosomal L32p protein family |
0.00067 |
| Pfam |
PF01130.16 |
CD36 family |
0.11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV18791-PA |
| T. castaneum |
TC001148 |
| P. humanus |
PHUM259920-PA |
| B. mori |
BGIBMGA012537-TA |
| A. gambiae |
AGAP000759 |
| M. musculus |
ENSMUSG00000057223 |
| A. mellifera |
GB14551-PA |
| P. vanderplanki |
Pv.16977 |
| C. quinquefasciatus |
CPIJ014045 |
| M. musculus |
ENSMUSG00000015672 |
| H. sapiens |
ENSP00000223324 |
| S. invicta |
SI2.2.0_80106 |
| H. melpomene |
HMEL016758-PA |
| D. plexippus |
DPOGS202064PA |
| D. melanogaster |
FBgn0039835 |