MidgeBase gene description page [Pn.12093]
Outline
| Gene ID | Pn.12093 |
| Type | Protein coding gene |
| Scaffold | PnScaf15473 |
| Start | 10024 |
| End | 14334 |
| Direction | + |
Sequence
Transcript: 1344 (bp)
ATGGCTGTTTATTTCATTCCTAAGACCAAATTGATCTCACGAGCGACAAACAATTTTCGACCAAAGCAATGGACTTCGAAATGGACGATAGTTAAGCGGCCTTTTTCGTTGTCACAACAATACCACCACCAGCATACTAACAGTACAAACGCCAAAAACCAAAGTAGTACCAGTAAAGGTAAATTACATAAAATTAAGCATAAGCTTCGATGGGGCGCGGGTGCTGGTTGGACAATTTTATCAATTCTGGATTGGTGGCTTTTGGCTGCAGGAGGTTGGTTGACATGGCAGGGTGCGATTTTGCGTTGGACTCCGTTAGGAATTTGTATAATCGCAGCCGCTCACTGGCATCTACACACTCGCGAATGCGAGCGACGCGGTCTTCCGAGAACGGCAACTGCATGGCAGACTAGCGTTTATTGCTCTCTCCCGCTACGACTCATGAGCCGAGCATGGGGTTGGCTCGCAGAACGACAAGTGCCTGAAACGATTCGTCCCTCAATCTACGGTCTCTACTCAACGGCGTTCGGTGTTAATCTCGAGGAGGCAGTGGTATCAGATTTAAAGCACTATCGGAGTTTATCGGAATTTTTCACAAGATCCATACGGGATGATTGTCGAGTTATTGCACCTGACTGTATTGTTTCACCATGTGACGGCCGAGTTCTTCATTTCGGTCCTGTTACGAGCGAAACTCACTTAGAGCAGGTCAAAGGTGTCACATATAGCCTCGAATCATTTCTCGGACCGAAATGGCAAAAATCCGAAAACTCAACCGACGCCGCGTACATTGAGAGCTTAAAGCAACGCAAGGAGGGCACAAGCCTGTATCACTGCATCATCTATCTCGCACCCGGTGACTATCACAGATTCCATTCGCCAACGTCATGGAAGCCGAACATCAGACGCCACTTCCACGGAGAACTGTTGTCAGTCAGTCCGAAAGTAGCAAATCTTGTTCCCGGATTGTTTTGTATCAATGAACGTGCGGCGTATATTGGCGAATGGGAGCACGGCTTTTTTAGCTTCACAGCTGTTGGTGCAACAAACGTGGGATCCGTGCAGGTTTTTATCGATCAGGATTTGAAGACAAATAGATGGCGCGGACTTAAAGTCGGTTCTATGAAGGAGAAGGAGTTCGATGAGCTGAAATTGAGAAATGATGCATTTCTCAACAAAGGCGAGCTTGTGGGTCAATTCAATATGGGCAGCACAATCGTATTAGTTTTCGAAGCACCGAGCTCATTTAGATTCAACTTGTCATCGAACCAAGTTGTTAAGGTTGGCCAGAGCCTCGGCTGTTTCTGCGATAACGATAATGATAGTGGAATGGAAAGTGAAGAG
Protein: 448 (aa)
MAVYFIPKTKLISRATNNFRPKQWTSKWTIVKRPFSLSQQYHHQHTNSTNAKNQSSTSKGKLHKIKHKLRWGAGAGWTILSILDWWLLAAGGWLTWQGAILRWTPLGICIIAAAHWHLHTRECERRGLPRTATAWQTSVYCSLPLRLMSRAWGWLAERQVPETIRPSIYGLYSTAFGVNLEEAVVSDLKHYRSLSEFFTRSIRDDCRVIAPDCIVSPCDGRVLHFGPVTSETHLEQVKGVTYSLESFLGPKWQKSENSTDAAYIESLKQRKEGTSLYHCIIYLAPGDYHRFHSPTSWKPNIRRHFHGELLSVSPKVANLVPGLFCINERAAYIGEWEHGFFSFTAVGATNVGSVQVFIDQDLKTNRWRGLKVGSMKEKEFDELKLRNDAFLNKGELVGQFNMGSTIVLVFEAPSSFRFNLSSNQVVKVGQSLGCFCDNDNDSGMESEE
| Type | Start | End | Length |
| CDS |
10024 |
10055 |
32 |
| CDS |
10952 |
11327 |
376 |
| CDS |
11389 |
11546 |
158 |
| CDS |
12035 |
12507 |
473 |
| CDS |
13962 |
14172 |
211 |
| CDS |
14238 |
14331 |
94 |
| intron |
10056 |
10951 |
896 |
| intron |
11328 |
11388 |
61 |
| intron |
11547 |
12034 |
488 |
| intron |
12508 |
13961 |
1454 |
| intron |
14173 |
14237 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654367 |
phosphatidylserine decarboxylase [Aedes aegypti] gb|EAT37827.1| phosphatidylserine decarboxylase [Aedes aegypti] |
1e-131 |
| InterPro |
IPR003817 |
Phosphatidylserine decarboxylase-related |
|
| InterPro |
IPR005221 |
Phosphatidylserine decarboxylase |
|
| Gene Ontology(BP) |
GO:0008654 |
phospholipid biosynthetic process |
|
| Gene Ontology(MF) |
GO:0004609 |
phosphatidylserine decarboxylase activity |
|
| Pfam |
PF02666.10 |
Phosphatidylserine decarboxylase |
1.2e-64 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000093574 |
| A. aegypti |
AAEL010223 |
| P. vanderplanki |
Pv.05332 |
| N. vitripennis |
NV10287-PA |
| A. mellifera |
GB18596-PA |
| D. plexippus |
DPOGS208092PA |
| P. humanus |
PHUM283470-PA |
| A. gambiae |
AGAP001235 |
| H. sapiens |
ENSP00000414395 |
| D. melanogaster |
FBgn0026576 |
| H. sapiens |
ENSP00000380637 |
| H. melpomene |
HMEL014268-PA |
| H. sapiens |
ENSP00000391739 |
| H. sapiens |
ENSP00000412169 |
| H. sapiens |
ENSP00000371586 |
| C. quinquefasciatus |
CPIJ008347 |
| B. mori |
BGIBMGA001766-TA |
| S. invicta |
SI2.2.0_12496 |
| H. sapiens |
ENSP00000266095 |
| T. castaneum |
TC004926 |
| H. sapiens |
ENSP00000338695 |