MidgeBase gene description page [Pn.12066]
Outline
| Gene ID | Pn.12066 |
| Type | Protein coding gene |
| Scaffold | PnScaf15426 |
| Start | 614 |
| End | 6107 |
| Direction | - |
Sequence
Transcript: 3936 (bp)
ATGTATGGCGAGAGAGATATCAATATCGATCAAATTGTCGTACAATCAGAAGGTGGCAACGCATGGACATCAGCGATATCAGATTTCCAACAGTACTTGATTATTGATTTGGGCGCCACGAAAAACATTACGCGCATCTCCATTCAGGGACGTCCGCATCACAGCGAGTATGTCTCTGAGTTCAGCATCAGCTACGGCTACAATGGCCTCGACTACGCGGACTACAAAGAGCCCGGCGGAAACACAAAGACACTTAGCCGATCAGCATGGACTCCGGTTGAGAATACGTACAACCACTATCTGTCGATAGATCTTGGTGGAAGGAAAATGATAAGAAAAATTTCCACGCTCGGTCGTCCAAACACTCATGAATATGTAACTGAATATATTATAACATACTCGGACGATGGTGAATTGTGGAAGGCTTACACTAACAACGATGCTCAGGATAAGCTTTTTAAGGGAAACGACAACGGCGACGACGTGAAGCACAATGTCTTCGATGTGCCGATAATTGCCCAGTGGGTTCGTGTCAATCCGACGAGATGGAATGACAGAATCTCCCTTCGCGTCGAGCTCTACGGATGCGACTACTATGCCGAAACGGTCTACTTCAACGGAAGCAGCTTGCTGAGTCTCGACCTGCTTCGCGAGCCGATTTCTGCTTCGCGAGAGACGCTTCAGTTCAGATTCAAGACCTCACACGCGAACGGCATTCTCATGTACTCGAAGGGCACGCAGGGAGACTTTTTTGCGCTGCAGCTGTACGAAAACCGAATGATTCTCAACATCAACCTCGGCTCACATTCGATGAGCTCGTTCTCGGTCGGAAGCCTGCTCGATGACAACGTGTGGCACGATGTCGTCATTTCGAGAAATCGCCGGGACATTTTGTTCTCCGTCGATCGTGTGGTGGTCGATGGAAAGATTAAGGGAGACTTCGACAAGCTGGATCTCAATCGAATGCTTTTTGTGGGCGGCGTTCCGTCGAGAGACGAAGGCCTCGTTGTTACGCAAAACTTCACTGGCTGCATCGAGAACTTGTACTTGAACACGACGAACTTCATTCGCGAAATGAAGGAGGCCTATTCGGAGGGTCAATACAGTCGCTTCGATAAGGTCAACACTCTGTACAACTGCCCCGATCCGCCCATCATGCCCGTCACCTTCCTCACGCGGACGTCCTACGCGAAGCTAAAGGGCTATGAGGGCGTGAAGAGCCTGAACGTCTCGCTTTCGTTCAGAACTTACGAGGACAAGGGACTGATTATTTACCACGAGTTTACTTCCAAGGGATACGTGAAGGTCTTCCTGGAGGACGGACGCGTGAAGACCGAAATAAAAACGGACGAAAAGGAATTTCATAGCACCGGCGATCATCGTCGCGGCATCGTTTTGGACAACTATGACGAGCAGTTTAATGACGGCAGATGGCACTCGCTGATTTTGACAATCAAGGAGAACAGCTTGATCATTGAGATCGATCAGCGACCTATGAGGACGGAAAAGTTGTTTAAGATCTTGACTGGAGCTTATTACTACATCGGAGGTTCGAAGACCAAAGAGATTCACAACATCATGGGCAATCGGGACGGATTTCTCGGATGCATGCGTCAGATTTCCGTCGACGGCAACTTCAAGCTTCCGCACGATTGGAAAGACGAGGACTTCTGCTGCAAAAATGAAATTCTCATGGACGCCTGTCACATGGTTGACCGTTGCAATCCGAACCCCTGCAAGCACAACGGTGTTTGTCGGCAAAATTCCTACGAATTTTTTTGTGACTGCGGCAATAGTGGATATTCTGGCGCTGTGTGCCATACTTCTTTGAACCCGCTATCTTGTCAAGCTTTCAAAAACGTGCAGACAGTCGGCCAAAAAGCAAACATCAAGATAGACGTCGACGGTTCCGGTCCACTCGATCCATTCGATGTCACGTGCGAGTTCTTGACAGACGGGCGTGTGCTCACCGTTCTGGGTCATTCGTCTGAGCATTCAACCGTGGTCGACAGTTTCCAGGAGCCAGGTTCCTACGATCAAACCATCGAGTACAATGCGAGAATGCCACAAATTGAAGCTCTCTTGAATCGCTCGCGAGAGTGCTCGCAAAGATTGATCTACAGCTGCCGTAATGCGAGACTTTTCAATTCGCCATCTGACGAGCTGAGCTTCCGACCATTTGGCTGGTGGCTGTCGAGACAAAATCAGATGATGGACTATTGGGCGGGCGCCTTGAAGGGCTCGCGCAAGTGCCAGTGCGGCATCGTCGGAAACTGTGTCGACCCGACCAAATGGTGCAATTGCGATGCCAACACGTACGATTGGCTCGAAGACAGCGGCGAAATAAAAGACAAGGAATACCTGCCGGTCAGAGGTCTCCGATTTGGCGACACGGGAACGGCGCTCGATGAGAAGCAAGCGAAATACACGCTCGGTCCTCTCATCTGCGAGGGAGACGATCTTTTCAATAATGTGGTGACATTCAGAATCACTGACGCAACAATCAACTTGCCTCGCTTCGACATGGGACACTCTGGCGACATTTACTTGGAGTTTAAGACGACGCAGGAAAATGCCGTCATTTTCCACGCTACTGGCCACACTGACTACATAAAGCTGTCAATAATCGATGGAAACAAGCTGAAATTCCAATATAGGGCTGGTTCGGGTCCGTTGTCGGTTGACGTTCTCACATCGTATCCTCTGAATGATAACAACTGGCACTCGGTGAGTGTCGAGAGAAACCGAAAAGAAGCTCGTTTGGTTGTGGACGGAGCCACAAAATCAGAAGTTCGTGAACCGCCAGGACCTGTTCGTGCTCTCTACTTGACCTCTGAGCTATCGATTGGCGCTACGCTCGACTATCAAGACGGCTTCGTTGGATGCATTCGCGCTCTGCTCTTGAACGGCAATCCTATAGACCTCAAATCGTATGCCGAGAGGAAGCTGTACGGCGTCTCGGCAGGCTGCGTTGGTCGATGCGAGAGCAGTCCTTGTCTCAACAACGGAACATGTTTTGAAAGATATGATGGCTTCACTTGCGATTGCCGCTGGAGCTCCTTCAAGGGACCAATCTGCGCTGACGAAATCGGTGTCAACCTGAGATCGGACTCGATAATCAAATACGACTTCTTGGGATCGTGGCGCTCAACAATTTCGGAAAATATCCGCGTCGGCTTCACAACGACAAACCAGAAAGGCTTCCTCCTCGGCTTCAGCTCAAACATCACTGGAGAGTATCTCACCATACTCGTTTCGAACTCGGGTGCTTTGAAGTTTGTCTTTGATTTTGGCTTCGAAAGACAGGAGCTTTCCTTCCCGGGCGTTCACTTCGGCCTTGGTCAATTTCACGACGTTCGCTTCATGAGAAAAAATTCCGGATCAACTGTCGTCATTATTGTCGACAACTACGAGCCGAAGGAGTTTCATTTCGACATCAAGGACTCGGCAGACGCCCAATTCAACAACATACAGTACATGTACATTGGCAAGAACGAGAGTATGACTGACGGTTTTGTTGGATGCGTTTCCCGAGTTGAATTCGATGACATCTTCCCGCTGAAGCTTCTCTTCCAACAAAATCCTCCGCCAAACGTGAAATCGATGGGTCCATCTCTCCTAACGGAAGACTTTTGCGGCGTTGAACCGGTCACCTTGCCTCCGGTCATCAAGGAAACCAGACCACCGCCGATTATTGACGAGGATAAGCTGAGAAGTTACGACGGAGTCAGTGCAGGATTCCTAGGAAGTCTCTTGTTCATCATTCTTTTGTTGCTGCTGATAATGGCAATTCTGATTTATCGTCACATGTCTCGCCATAAGGGTGAATATTTGACCCAAGAGGATAAGGGAGCAGATGACGCATTAGATCCAGATGATGCCGTTGTGCACTCAACGACCGGTCACCATGTCACCAAAAAGAAAGAATGGTTCATT
Protein: 1312 (aa)
MYGERDINIDQIVVQSEGGNAWTSAISDFQQYLIIDLGATKNITRISIQGRPHHSEYVSEFSISYGYNGLDYADYKEPGGNTKTLSRSAWTPVENTYNHYLSIDLGGRKMIRKISTLGRPNTHEYVTEYIITYSDDGELWKAYTNNDAQDKLFKGNDNGDDVKHNVFDVPIIAQWVRVNPTRWNDRISLRVELYGCDYYAETVYFNGSSLLSLDLLREPISASRETLQFRFKTSHANGILMYSKGTQGDFFALQLYENRMILNINLGSHSMSSFSVGSLLDDNVWHDVVISRNRRDILFSVDRVVVDGKIKGDFDKLDLNRMLFVGGVPSRDEGLVVTQNFTGCIENLYLNTTNFIREMKEAYSEGQYSRFDKVNTLYNCPDPPIMPVTFLTRTSYAKLKGYEGVKSLNVSLSFRTYEDKGLIIYHEFTSKGYVKVFLEDGRVKTEIKTDEKEFHSTGDHRRGIVLDNYDEQFNDGRWHSLILTIKENSLIIEIDQRPMRTEKLFKILTGAYYYIGGSKTKEIHNIMGNRDGFLGCMRQISVDGNFKLPHDWKDEDFCCKNEILMDACHMVDRCNPNPCKHNGVCRQNSYEFFCDCGNSGYSGAVCHTSLNPLSCQAFKNVQTVGQKANIKIDVDGSGPLDPFDVTCEFLTDGRVLTVLGHSSEHSTVVDSFQEPGSYDQTIEYNARMPQIEALLNRSRECSQRLIYSCRNARLFNSPSDELSFRPFGWWLSRQNQMMDYWAGALKGSRKCQCGIVGNCVDPTKWCNCDANTYDWLEDSGEIKDKEYLPVRGLRFGDTGTALDEKQAKYTLGPLICEGDDLFNNVVTFRITDATINLPRFDMGHSGDIYLEFKTTQENAVIFHATGHTDYIKLSIIDGNKLKFQYRAGSGPLSVDVLTSYPLNDNNWHSVSVERNRKEARLVVDGATKSEVREPPGPVRALYLTSELSIGATLDYQDGFVGCIRALLLNGNPIDLKSYAERKLYGVSAGCVGRCESSPCLNNGTCFERYDGFTCDCRWSSFKGPICADEIGVNLRSDSIIKYDFLGSWRSTISENIRVGFTTTNQKGFLLGFSSNITGEYLTILVSNSGALKFVFDFGFERQELSFPGVHFGLGQFHDVRFMRKNSGSTVVIIVDNYEPKEFHFDIKDSADAQFNNIQYMYIGKNESMTDGFVGCVSRVEFDDIFPLKLLFQQNPPPNVKSMGPSLLTEDFCGVEPVTLPPVIKETRPPPIIDEDKLRSYDGVSAGFLGSLLFIILLLLLIMAILIYRHMSRHKGEYLTQEDKGADDALDPDDAVVHSTTGHHVTKKKEWFI
| Type | Start | End | Length |
| CDS |
617 |
804 |
188 |
| CDS |
878 |
1012 |
135 |
| CDS |
1080 |
1618 |
539 |
| CDS |
1720 |
1987 |
268 |
| CDS |
2048 |
2191 |
144 |
| CDS |
2255 |
2761 |
507 |
| CDS |
2824 |
3153 |
330 |
| CDS |
3277 |
4648 |
1372 |
| CDS |
4786 |
4982 |
197 |
| CDS |
5268 |
5274 |
7 |
| CDS |
5465 |
5661 |
197 |
| CDS |
6056 |
6107 |
52 |
| intron |
805 |
877 |
73 |
| intron |
1013 |
1079 |
67 |
| intron |
1619 |
1719 |
101 |
| intron |
1988 |
2047 |
60 |
| intron |
2192 |
2254 |
63 |
| intron |
2762 |
2823 |
62 |
| intron |
3154 |
3276 |
123 |
| intron |
4649 |
4785 |
137 |
| intron |
4983 |
5267 |
285 |
| intron |
5275 |
5464 |
190 |
| intron |
5662 |
6055 |
394 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001861636 |
neurexin-4 [Culex quinquefasciatus] gb|EDS35896.1| neurexin-4 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR000421 |
Coagulation factor 5/8 C-terminal type domain |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR000742 |
Epidermal growth factor-like domain |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR001791 |
Laminin G domain |
|
| InterPro |
IPR008979 |
Galactose-binding domain-like |
|
| Gene Ontology(BP) |
GO:0007155 |
cell adhesion |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF02210.19 |
Laminin G domain |
4.5e-84 |
| Pfam |
PF00054.18 |
Laminin G domain |
3.5e-53 |
| Pfam |
PF00008.22 |
EGF-like domain |
0.0012 |
| Pfam |
PF00754.20 |
F5/8 type C domain |
4.6e-36 |
| Pfam |
PF13385.1 |
Concanavalin A-like lectin/glucanases superfamily |
1.2e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000320728 |
| M. musculus |
ENSMUSG00000031772 |
| M. musculus |
ENSMUSG00000039419 |
| N. vitripennis |
NV13304-PA |
| A. mellifera |
GB14382-PA |
| H. sapiens |
ENSP00000297668 |
| H. sapiens |
ENSP00000350863 |
| H. sapiens |
ENSP00000432863 |
| H. sapiens |
ENSP00000439733 |
| H. sapiens |
ENSP00000306893 |
| H. sapiens |
ENSP00000354778 |
| M. musculus |
ENSMUSG00000038048 |
| H. sapiens |
ENSP00000264638 |
| H. sapiens |
ENSP00000417628 |
| H. sapiens |
ENSP00000366787 |
| T. castaneum |
TC011252 |
| H. sapiens |
ENSP00000418741 |
| A. gambiae |
AGAP007545 |
| H. sapiens |
ENSP00000466571 |
| H. sapiens |
ENSP00000440732 |
| H. sapiens |
ENSP00000399013 |
| H. sapiens |
ENSP00000340890 |
| H. sapiens |
ENSP00000366881 |
| H. sapiens |
ENSP00000276974 |
| P. humanus |
PHUM259620-PA |
| H. sapiens |
ENSP00000366884 |
| M. musculus |
ENSMUSG00000067028 |
| P. vanderplanki |
Pv.04956 |
| H. sapiens |
ENSP00000366784 |
| M. musculus |
ENSMUSG00000017167 |
| M. musculus |
ENSMUSG00000033063 |
| S. invicta |
SI2.2.0_05420 |
| H. sapiens |
ENSP00000405700 |
| M. musculus |
ENSMUSG00000070695 |
| D. melanogaster |
FBgn0013997 |
| B. mori |
BGIBMGA002547-TA |
| D. plexippus |
DPOGS210220PA |
| C. quinquefasciatus |
CPIJ011417 |
| A. aegypti |
AAEL005321 |
| H. sapiens |
ENSP00000432883 |
| H. sapiens |
ENSP00000366887 |