MidgeBase gene description page [Pn.12052]
Outline
| Gene ID | Pn.12052 |
| Type | Protein coding gene |
| Scaffold | PnScaf15386 |
| Start | 1534 |
| End | 3245 |
| Direction | - |
Sequence
Transcript: 1494 (bp)
ATGCAACGCATGCATATCACTGAAAACAACAGAAAAATTTCGGTAGCTGCCGTTCACAAACAGCTTTACAACTCTGCTTTAAATATTTGCCTCATTTTCGGTGTGGACAGGAACAAAAAGAGAGACACATAGAATCGAGTAGCAGCCAACTCACATACGATGGACAGTTCGATTTCGTTGTGTGAGTCCGAGTCCCTTGATGGCTTCAGTTCGATGGCACCGCCCTCACCAGTGTCCCGAGAGCAATTGCAGAAACGAATAGATAGTCTTAATCAACAGAATAAAGTCCTCAAAGTGGAGCTGGACACTTACAAGATACGTATAAAGCAGCTACAAGAGGAGAACAAGTCGCTAAGACAAGCATCTGTGAATATTCAGGCAAAGGCCGAACAAGAGGAGGAATTCATTTCCAATACCTTGCTGAAGAAGATTCAGGCGCTGAAGAAGGAAAAGGAGACGCTTGCACATCACTACGAGCGCGAGGAGGAATGCCTCACAAATGATTTATCGCGCAAGCTCGACCAGCTGCGCCAGGAGAAGTGCAAGCTCGAGCTGACTCTCGAGCAGGAACAGGAATGCCTTGTGAATAAGTTGATGCGGAAGATTGAGAAGCTCGAAGCAGAAACGTTGGCCAAGCAGACAAATTTGGAGCAGCTCCGACGCGAAATGGTGGAGCTCGAGAATACATTGGAGCAGGAGCAAGAAGCACTAGTCAATAAGTTGTGGAAACGTATGGATAAGTTGGAGGCCGAAAAGAGATCTCTGCAAATTCGGTTGGATCAGCCGACAGAGCCAGCACACATTATTCAGCAACAAATTCAAAATAACTCAAACGGTGATGAAGTTAATGTCCTCACATCTCACATTCAAAACTTACGATCTGAAATTGACGTGTTGCAGAACAATTTGGCTGCAGCTGAGAGGGAAAAGCTCGAAAAGACTCAACACTTTCAAATCGAAGAACGCCACATTCGCGAGGAAAACGTACGCTTGCAGCGGAAACTACAGCTCGAGGTGGAGCGGCGTGAAGAGCTGTGTCGCCACTTGTCCGAATCTGAGAGCTCTTTAGAAATGGAAGAGGAGCGAATTTTCAATGAAAATGTAGGAAACGCTCGCACACGGACAATCAGCTCTCCCGTTCCAAATCATAGTCCATCATCTCGTCCAATTTCGCCAACTCGTTGCTACTACTGTGCTCGCTGTGGCGTGCAGCTTTTCGGGCGTCGTGAACGCTTCGTTAAGCCTGCTATTCCACTGCCAAGTCTCAGTCTCAATACCTCTGCACCTAACGTACTCTCTTCAGCTTCTGTAATTCCAAGTCACCACTCATCATCTCAAGCTATCAACATCAGCAACAACAACGTTAATTCTGGAAGCAATGTAAGTTTGTCATCACTAAACAATTCAATTAGCTCAACGAGCTCAACTCTACCATCACAGAGCAGCGGAAACATCTCGGCTTTCGTCCAACCACCCAGCCCGATGAACCTGGAA
Protein: 498 (aa)
MQRMHITENNRKISVAAVHKQLYNSALNICLIFGVDRNKKRDTXNRVAANSHTMDSSISLCESESLDGFSSMAPPSPVSREQLQKRIDSLNQQNKVLKVELDTYKIRIKQLQEENKSLRQASVNIQAKAEQEEEFISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLDQLRQEKCKLELTLEQEQECLVNKLMRKIEKLEAETLAKQTNLEQLRREMVELENTLEQEQEALVNKLWKRMDKLEAEKRSLQIRLDQPTEPAHIIQQQIQNNSNGDEVNVLTSHIQNLRSEIDVLQNNLAAAEREKLEKTQHFQIEERHIREENVRLQRKLQLEVERREELCRHLSESESSLEMEEERIFNENVGNARTRTISSPVPNHSPSSRPISPTRCYYCARCGVQLFGRRERFVKPAIPLPSLSLNTSAPNVLSSASVIPSHHSSSQAINISNNNVNSGSNVSLSSLNNSISSTSSTLPSQSSGNISAFVQPPSPMNLE
| Type | Start | End | Length |
| CDS |
1537 |
1812 |
276 |
| CDS |
1899 |
2238 |
340 |
| CDS |
2314 |
3060 |
747 |
| CDS |
3115 |
3245 |
131 |
| intron |
1813 |
1898 |
86 |
| intron |
2239 |
2313 |
75 |
| intron |
3061 |
3114 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843899 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS35231.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-140 |
| InterPro |
IPR019152 |
Protein of unknown function DUF2046 |
|
| Pfam |
PF09755.4 |
Uncharacterized conserved protein H4 (DUF2046) |
1.8e-142 |
| Pfam |
PF00170.16 |
bZIP transcription factor |
0.024 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP005883 |
| M. musculus |
ENSMUSG00000048701 |
| A. mellifera |
GB10097-PA |
| P. vanderplanki |
Pv.08985 |
| B. mori |
BGIBMGA000321-TA |
| H. melpomene |
HMEL007066-PA |
| D. plexippus |
DPOGS207969PA |
| P. humanus |
PHUM607030-PA |
| T. castaneum |
TC013430 |
| N. vitripennis |
NV19155-PA |
| D. melanogaster |
FBgn0036685 |
| S. invicta |
SI2.2.0_08651 |
| H. sapiens |
ENSP00000263102 |
| C. quinquefasciatus |
CPIJ002230 |
| A. aegypti |
AAEL001379 |