MidgeBase gene description page [Pn.12051]
Outline
| Gene ID | Pn.12051 |
| Type | Protein coding gene |
| Scaffold | PnScaf15372 |
| Start | 484 |
| End | 2922 |
| Direction | - |
Sequence
Transcript: 423 (bp)
ATGCCAGTCGAGAAGAGCTCAACAAATACGCTGCATCGAGCGCCGGACATCAGCATGCTGCCGCCGTCGCCGAACGAGCCGAAGTTGGTAAATGTGACAGCAACGAGTCTGACGCTTGCATGGAACAAAGTGCAATCGAAGCAGAGCGGCACGACAGCCTTTATCGGATATTCCGTCGAGTACTTCAGTTCCGATTTGCACTCGGGCTGGAATATCGCAGCACAACGAGTGCCCAGCAATGTTGTCACGATAACTGACTTAAGGCCGGGAACATCATATGTTTTTCTAGTTCGTGCAGAGAACTCGTATGGCCTCTCAGAACCTTCACCGGCGTCGAGTGTAATCAAAACACTGGGTACCGACAAGAGCGTCTTACCACCTAACGAACTCGCTGCTGTTCGCACCATTCTTAGCGGAAAGAAC
Protein: 141 (aa)
MPVEKSSTNTLHRAPDISMLPPSPNEPKLVNVTATSLTLAWNKVQSKQSGTTAFIGYSVEYFSSDLHSGWNIAAQRVPSNVVTITDLRPGTSYVFLVRAENSYGLSEPSPASSVIKTLGTDKSVLPPNELAAVRTILSGKN
| Type | Start | End | Length |
| CDS |
487 |
489 |
3 |
| CDS |
809 |
979 |
171 |
| CDS |
2410 |
2652 |
243 |
| CDS |
2917 |
2922 |
6 |
| intron |
490 |
808 |
319 |
| intron |
980 |
2409 |
1430 |
| intron |
2653 |
2916 |
264 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002063324 |
GK21847 [Drosophila willistoni] gb|EDW74310.1| GK21847 [Drosophila willistoni] |
1e-35 |
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR003961 |
Fibronectin, type III |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00041.16 |
Fibronectin type III domain |
1e-14 |
| Pfam |
PF09294.5 |
Interferon-alpha/beta receptor, fibronectin type III |
0.035 |
| Pfam |
PF07495.8 |
Y_Y_Y domain |
0.063 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes