MidgeBase gene description page [Pn.12045]
Outline
| Gene ID | Pn.12045 |
| Type | Protein coding gene |
| Scaffold | PnScaf15341 |
| Start | 6549 |
| End | 8382 |
| Direction | + |
Sequence
Transcript: 1494 (bp)
ATGTCTTTCTCATCGGACGAAGTAAATTTTCTTGTTTATAGGTATCTACAAGAGTCAGGATTCTTGCATTCTGCGTACATGTTTGGCATTGAATCGCATATATCGCAAAGTAACATAAATGGCGCTTTAGTTCCTCCCGCTGCACTTCTCTCGATAATCCAGAAAGGTCTTCAATACACCGAAGCAGAAATAAGCGTCGGCGAGGACGGCACAGAAACGAAGATTGTGGAGAAGCTGAGTCTCATAGATGCCGTGATGCCGGAAGTAGTCGCGAATCGTCAAAATCAGTTGAACAAAACAAAGGCGAACATGGCCGAGACGGCAGAGACGAACGGCGAACAAACAGCAGAATCAACAAATGCCGCCGAGAAAACAGAAGGTGCAATTAAAGACGATCCAGACTCGGATAATTTCATCGAAATATCGCAGAACAAAGCGACAATCCTGAGAGGGCACGAGAGCGAAGTGTTTATATGCGCGTGGAATCCGATGCGTGACTTACTGGCGAGCGGTTCTGGCGACTCCACTGCTCGCATATGGGACATGTCGGACAACGTGTCGACGAGTAATCAGCTTGTCCTGCGTCATTGCATCAAGCAGGGCGGTGCGGAGGTTCCCTCAAACAAGGATGTCACTTCGCTGGACTGGAATTGCGACGGAACGTTCCTGGCGACCGGCTCGTACGACGGCTACGCCCGAATTTGGACGACAGAGGGCCGTTTGGCGAACACGCTGGGTCAACACAAAGGACCGATTTTTGCGCTGAAGTGGAACAAGAAAGGAAACTACATCTTATCGGCGGGCGTCGACAAAACGACAATCATCTGGAATGCGGTGACGGGCGAGTCGCATCAGCAGTTCTCATTTCACAATGCGCCCGCCCTCGATGTCGACTGGCAGACAAACACGTCGTTCGCCAGTTGCAGCACAGACCAGCAAATTCACGTCTGCAAGCTGGGCGCGGACAAGCCAATTAAGACATTTATCGGTCACTTGAACGAAGTCAACGCCATCAAGTGGGATCCACAGGGGCAACTGCTTGCCTCGTGCTCCGACGACATGACCCTGAAGATTTGGTCGATGAACTTCGACACCTACGTGCACGATCTGCAAGCGCACTCGAAGGAAATCTACACAATCAAGTGGTCGCCGACGGGCCCGGGAACGGCCAATCCAAACATGAATCTGTTTTTGGCGAGTGCGAGCTTCGACTCGACTGTGCGCCTCTGGGATGTCGAGCGCGGCACGTCCATTCACACACTCACGAAACACACCGAGCCCGTGTACTCGGTCGCTTTCAGCCCCGACGGCAAGTTCCTCGCTTCGGGCAGTTTCGACAAGTGCGTGCACATTTGGAGTACGCAGACGGGTCAGTTGGTGCACAGTTATCGCGGCACGGGCGGCATCTTTGAGGTCTGCTGGAACTCGAAGGGCTGCAAGGTTGGCGCAAGTGCGTCAGACGGCTCCGTCTTCGTCTTGGACTTGAGAAAACTT
Protein: 498 (aa)
MSFSSDEVNFLVYRYLQESGFLHSAYMFGIESHISQSNINGALVPPAALLSIIQKGLQYTEAEISVGEDGTETKIVEKLSLIDAVMPEVVANRQNQLNKTKANMAETAETNGEQTAESTNAAEKTEGAIKDDPDSDNFIEISQNKATILRGHESEVFICAWNPMRDLLASGSGDSTARIWDMSDNVSTSNQLVLRHCIKQGGAEVPSNKDVTSLDWNCDGTFLATGSYDGYARIWTTEGRLANTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWNAVTGESHQQFSFHNAPALDVDWQTNTSFASCSTDQQIHVCKLGADKPIKTFIGHLNEVNAIKWDPQGQLLASCSDDMTLKIWSMNFDTYVHDLQAHSKEIYTIKWSPTGPGTANPNMNLFLASASFDSTVRLWDVERGTSIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGQLVHSYRGTGGIFEVCWNSKGCKVGASASDGSVFVLDLRKL
| Type | Start | End | Length |
| CDS |
6549 |
6606 |
58 |
| CDS |
6690 |
6839 |
150 |
| CDS |
6918 |
7360 |
443 |
| CDS |
7467 |
7811 |
345 |
| CDS |
7882 |
8379 |
498 |
| intron |
6607 |
6689 |
83 |
| intron |
6840 |
6917 |
78 |
| intron |
7361 |
7466 |
106 |
| intron |
7812 |
7881 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA00819 |
hypothetical protein TcasGA2_TC003706 [Tribolium castaneum] |
0.0 |
| InterPro |
IPR013720 |
LisH dimerisation motif, subgroup |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR006594 |
LisH dimerisation motif |
|
| InterPro |
IPR020472 |
G-protein beta WD-40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF04762.7 |
IKI3 family |
7.2e-06 |
| Pfam |
PF12894.2 |
Anaphase-promoting complex subunit 4 WD40 domain |
0.0076 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
1.8e-68 |
| Pfam |
PF08513.6 |
LisH |
1.9e-09 |
| Pfam |
PF14208.1 |
Domain of unknown function (DUF4320) |
0.07 |
| Pfam |
PF08662.6 |
Eukaryotic translation initiation factor eIF2A |
2.5e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000370348 |
| D. plexippus |
DPOGS204225PA |
| P. vanderplanki |
Pv.01686 |
| M. musculus |
ENSMUSG00000027630 |
| H. sapiens |
ENSP00000445317 |
| T. castaneum |
TC003706 |
| C. quinquefasciatus |
CPIJ010919 |
| H. sapiens |
ENSP00000217964 |
| H. sapiens |
ENSP00000385988 |
| H. sapiens |
ENSP00000372499 |
| H. melpomene |
HMEL015146-PA |
| P. humanus |
PHUM076530-PA |
| N. vitripennis |
NV11054-PA |
| A. gambiae |
AGAP007739 |
| N. vitripennis |
NV11054-PB |
| A. mellifera |
GB14693-PA |
| H. sapiens |
ENSP00000394097 |
| H. sapiens |
ENSP00000413251 |
| D. melanogaster |
FBgn0263933 |
| H. sapiens |
ENSP00000328879 |
| N. vitripennis |
NV11054-PC |
| H. sapiens |
ENSP00000347289 |
| A. aegypti |
AAEL003539 |
| H. sapiens |
ENSP00000405574 |
| B. mori |
BGIBMGA007583-TA |
| H. sapiens |
ENSP00000437721 |
| S. invicta |
SI2.2.0_03726 |
| M. musculus |
ENSMUSG00000025246 |
| N. vitripennis |
NV11054-PD |